Rluc030059.1
Basic Information
- Insect
- Reticulitermes lucifugus
- Gene Symbol
- -
- Assembly
- GCA_026260175.1
- Location
- JAKCWW010005292.1:24973-30483[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 21 0.19 19 6.6 1.0 1 23 130 152 130 152 0.98 2 21 0.0028 0.28 12.4 2.7 1 23 158 181 158 182 0.95 3 21 2 2e+02 3.5 2.0 1 23 203 225 203 225 0.95 4 21 9.9e-05 0.0098 17.0 1.3 1 23 231 253 231 253 0.98 5 21 0.0008 0.08 14.1 1.8 1 23 256 278 256 278 0.93 6 21 0.0043 0.42 11.8 2.2 1 23 470 492 470 492 0.98 7 21 1e-06 0.0001 23.2 2.3 1 23 500 522 500 522 0.97 8 21 0.039 3.9 8.8 1.0 2 23 530 552 529 552 0.92 9 21 0.023 2.2 9.6 2.3 3 23 558 578 556 578 0.96 10 21 0.085 8.5 7.8 3.7 1 23 584 607 584 607 0.93 11 21 8.1e-05 0.008 17.3 6.1 1 23 620 642 620 642 0.99 12 21 0.016 1.5 10.1 0.9 2 23 650 672 649 672 0.92 13 21 0.032 3.2 9.1 4.9 1 23 676 698 676 698 0.94 14 21 0.004 0.4 11.9 1.9 1 23 704 727 704 727 0.97 15 21 0.049 4.9 8.5 2.7 3 23 732 752 731 752 0.97 16 21 8.4e-07 8.4e-05 23.5 0.1 1 23 759 781 759 781 0.98 17 21 4.5 4.5e+02 2.3 0.2 2 23 788 809 787 809 0.83 18 21 1.9e-05 0.0019 19.3 1.9 1 23 815 837 815 837 0.98 19 21 0.00013 0.013 16.6 3.1 1 23 843 866 843 866 0.98 20 21 5e-07 5e-05 24.2 1.4 1 23 872 894 872 894 0.98 21 21 0.00013 0.013 16.6 1.7 1 23 900 923 900 923 0.95
Sequence Information
- Coding Sequence
- ATGGGCGACAGATTCATGGTAATTGTAACAGCAGAAGATGTACTATGTCGCCGCTGTGCATCTTTAATAATCCGTCTTGATAAATTGGAAGTTGATACGGAAATTGTAAAGAAAGCACTAACTGGTTATTTGAAAATGAAATATCATTTGTATGATGATGATGATGATGAGAGTGGACCACACGTGTTGAATTCCTCTTATATGCATGGATTGGAAGAAGAGATACCAGATGGCACAGACAGTGGTGATCGGATGATTTCCCATGCTTTAAAAGACATCACGTTTGTAGGTTCAGAAGATGAGGGTGGTGCTTCTCACTTACACATCAAACAAGAAGTAGCTGATGAAAAAGAAATTCAGTGTTTTGACCGTATAGATGTCACCGGGTACAAATGTGTATCATGTCAGTATAAAACCACAAGTTCTGTTGTTTTTATGGAGCATTTAAAGATCCATTCCAAAGAGATGTATTTCAAGTGCTCAAATTGTAATGAAGAATTCCGCAGTCACTGGGAAATTCAGAAGCATATTGAGAATGTTCATCACTCACATTTACAGGAAAATGGAAAAAGTGATAATGCAGGAACTAGGATTCCTCTCACATTTTATGAATGCAATATCTGTAAATTTCAGAGTCCTCACAAAACAGTTTTTGACAGTCACGTTCTGAAACATGACAGGGCAGTATTTTATAAGTGTTCAATTTGCTCAAAACAACTGAGATCGAAAGCATTGCTGAAGAAGCATGCAAACAGTCACAGAATTTTCAAATGTGGACTGTGTAACCTGACTTTTAAAGAAAAGAGCAGCTTACTGAAGCATTTTGTGCAGCATAGGATTTCAAAAGGTCTGCAAGTGAAAGAGGAGGAGCAGAATATGGCACAGTCACAGGACAGACCTGAAGAGCAGGCACAGGTTGACTGGCAGACTCATGACCAGGACAAAGTGGAACAGTTGCTGGAACAGTTGCATGCTGAAGATCCCATCAGCAAAGCTAAAGAGAAAGACAACCAGAATCATCAGGATGAAAGCATGGAGGGAGATGAGCAAAAACCAACTGCAGAGACTAAAACTAATGGGAAACTGCAATGTATTGAAAGTGAAGGCACTTTTGGGGAAGTTCAGAGAGAAGTGGATGAAGCCTTCTTTCTGTCAGAAGATTCAGTTTTTGGTAAAGATGAGGATGAAAAGCTGTCAGAAGATATTCATACAAATGAAGGGAGTGAAACCAGTGATTTCCTTACTGATCCTTCCACATACTTGCAAAACTTTCAATCAAGCAGTGAGAAGCAGGAAGAGAACCAGGGGATTGATGACAGTAAGTCCGAATTCCCTCTTAATATACTTCTTGATGGAAGTGCAGACAATACAAAGAACATAACTACTACATCATTGAAGAAGAGGGTCTATGTGTGTTCTGTATGTGGTTTAAGGGCTTACACTGAGAGCCACATGAAGAGACATTTTAAGAGCCACATAGCAATTGAGAAAAAGATATATGAATGTCATATATGTAACAAGGTCTTAACAACCCGTAGTAACCTAAACAGGCACCTTTCAAATCATGAGAATTGTCCTGGCATGGTCACTTGCAAATTGTGCAACGAAGAACTGACTGATCGATTACATCTGAAGCAGCATCTTGAGGACCAGCATACAGGACCCCAGCACTGTTCATTCTGTAACATGGAGTTCCCAAACAAGAGAGCATTTAAAGAACATGAATTAACCCATCCAGAGAAAGGTATCCACCAGTGTGACATATGCCACAAAAGATTCCTGACTCAGCTTCGACTGAGGACACATCTTGAAAATATTCACAGCAGTCCTAAAGATGGAAAGACAGAGGAAAAAATATACAAATGTCACATCTGCTCCAAGATTTTAACAACATATCATAACTTAAAAAGGCATGTGAGAAATCATGAGAAAAGTTCAGGAAGTGTAAAATGTACTTTATGTACCAAGGAATTGACAGATAAATTGCATCTGCGACAACATGTTGAAGAAATACATCCCGAAACTCACCAGTGTCCTTTCTGTCAAAAGGTTTTCTCAAACAAAAAAGTCTGCAAAGCTCATGAACTGACTCACCCAGAAAGATATGTATACAAATGTGACATGTGTGATAAGATGTTTCTCAATGAAACAAGATTAGAAAAACACAAGAATATGTTTCACAGGGACCCTCATTGCCGATACTGTGAAAAAGAAATAAAGGATCCTACAAAGCTGTTTAATCATGAACGGAGACATGAGATGTATAAGAACAAATTTCCTTGTGAGCTGTGTCCCAAGGTTTTTCGCACACCATCGGGCCTCAAGTATCACATGTCTGTTCATACTGGAAAGTATGCAGTGTACTGTGAGGTATGTGGCAAAGGCATGCACTCAGAAATTGTGCTGGAAGAACACAAAGCTACACACACCAAAGAAATCCGCTACACATGTGAGTTATGTGGGCGCAACTTCTCTTCCAATAGCACTTACCGGATGCACCGCAAATGGCATGATGACCCTTTACCTTACAAGTGCAAGACCTGTGATCGCAAGTTCAAACACACCTCCATCCTAGCAGTGCATATGAGACGTGCCCATACAGGAGAGCGCCCCTACAAGTGTCCACATTGCCCGTATACCTTCAGTGTGAGCAGCACTCTACAGAAACACATAATTTTGCACACCAAGAAATATCCCCACAACTGCAAGCTCTGTGGAAAAGGTTTCACCACTCGTACTAAGATTGCACGACACATGGCAAAAGTGCATAATGATTTTGACATGCTCAATGCTAAGCCCACGCCATGCCAGTACAAGATGGTACTCAAACCAAGTGAGCTGTTGCTAGCAGAATCTGAGGACTCTGTGCCCAAACAGGAAGAGAAACTTCCTGAGCCAAAGTTTGAGGAATCGGTACCTGAGGAACACATTGTAGAGCCTGCACAGGCACTCTTCTTGTTTCACTAA
- Protein Sequence
- MGDRFMVIVTAEDVLCRRCASLIIRLDKLEVDTEIVKKALTGYLKMKYHLYDDDDDESGPHVLNSSYMHGLEEEIPDGTDSGDRMISHALKDITFVGSEDEGGASHLHIKQEVADEKEIQCFDRIDVTGYKCVSCQYKTTSSVVFMEHLKIHSKEMYFKCSNCNEEFRSHWEIQKHIENVHHSHLQENGKSDNAGTRIPLTFYECNICKFQSPHKTVFDSHVLKHDRAVFYKCSICSKQLRSKALLKKHANSHRIFKCGLCNLTFKEKSSLLKHFVQHRISKGLQVKEEEQNMAQSQDRPEEQAQVDWQTHDQDKVEQLLEQLHAEDPISKAKEKDNQNHQDESMEGDEQKPTAETKTNGKLQCIESEGTFGEVQREVDEAFFLSEDSVFGKDEDEKLSEDIHTNEGSETSDFLTDPSTYLQNFQSSSEKQEENQGIDDSKSEFPLNILLDGSADNTKNITTTSLKKRVYVCSVCGLRAYTESHMKRHFKSHIAIEKKIYECHICNKVLTTRSNLNRHLSNHENCPGMVTCKLCNEELTDRLHLKQHLEDQHTGPQHCSFCNMEFPNKRAFKEHELTHPEKGIHQCDICHKRFLTQLRLRTHLENIHSSPKDGKTEEKIYKCHICSKILTTYHNLKRHVRNHEKSSGSVKCTLCTKELTDKLHLRQHVEEIHPETHQCPFCQKVFSNKKVCKAHELTHPERYVYKCDMCDKMFLNETRLEKHKNMFHRDPHCRYCEKEIKDPTKLFNHERRHEMYKNKFPCELCPKVFRTPSGLKYHMSVHTGKYAVYCEVCGKGMHSEIVLEEHKATHTKEIRYTCELCGRNFSSNSTYRMHRKWHDDPLPYKCKTCDRKFKHTSILAVHMRRAHTGERPYKCPHCPYTFSVSSTLQKHIILHTKKYPHNCKLCGKGFTTRTKIARHMAKVHNDFDMLNAKPTPCQYKMVLKPSELLLAESEDSVPKQEEKLPEPKFEESVPEEHIVEPAQALFLFH
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00370402;
- 90% Identity
- iTF_00370402;
- 80% Identity
- -