Cfor003799.1
Basic Information
- Insect
- Coptotermes formosanus
- Gene Symbol
- -
- Assembly
- GCA_013340265.1
- Location
- BLKM01012977.1:429159-435672[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 21 1.7 83 3.5 1.0 1 23 247 269 247 269 0.97 2 21 0.008 0.39 10.8 1.5 1 23 275 298 275 299 0.93 3 21 1.9 93 3.3 2.0 1 23 320 342 320 342 0.95 4 21 0.00017 0.0084 16.0 1.3 1 23 348 370 348 370 0.98 5 21 0.00079 0.038 14.0 1.8 1 23 373 395 373 395 0.93 6 21 0.0042 0.2 11.7 2.2 1 23 587 609 587 609 0.98 7 21 6.7e-07 3.2e-05 23.6 2.1 1 23 617 639 617 639 0.98 8 21 0.038 1.9 8.7 1.0 2 23 647 669 646 669 0.92 9 21 0.022 1.1 9.4 2.3 3 23 675 695 673 695 0.96 10 21 0.1 4.9 7.3 3.6 1 23 701 724 701 724 0.93 11 21 7.9e-05 0.0038 17.1 6.1 1 23 737 759 737 759 0.99 12 21 0.028 1.3 9.1 1.3 2 23 767 789 767 789 0.92 13 21 0.031 1.5 8.9 4.9 1 23 793 815 793 815 0.94 14 21 0.0039 0.19 11.8 1.5 1 23 821 844 821 844 0.97 15 21 0.048 2.3 8.3 2.7 3 23 849 869 848 869 0.97 16 21 8.3e-07 4e-05 23.3 0.1 1 23 876 898 876 898 0.98 17 21 4.4 2.1e+02 2.2 0.2 2 23 905 926 904 926 0.83 18 21 1.9e-05 0.0009 19.1 1.9 1 23 932 954 932 954 0.98 19 21 0.00013 0.0063 16.4 3.1 1 23 960 983 960 983 0.98 20 21 4.1e-07 2e-05 24.3 1.3 1 23 989 1011 989 1011 0.98 21 21 0.00013 0.0062 16.4 1.7 1 23 1017 1040 1017 1040 0.95
Sequence Information
- Coding Sequence
- ATGGTCAGCCCGCGCCGTTGTCGCGCTAGACCTAACAAGCCATCACTTTTAAAACATTCACTGTACCACGTTTCATGCAACAAAGCACTTCCCGAAGATACTGGaacttacttaaattttaatatgggTTCTGTACGTTCATTTAAAACGGAGCAGTTGCATATGGTTAAGCGTAAATGGATGCCTTCTAGTGACGGATATGACccagaactgaaattaaaagaagatgCAAGAAATTATACTTCTGCCTCGCAGTGCTTTATTTGTGACAGTGTGGTTAGTGGTAGAGCCACTCCCCTTTTAATGGGCATTGCACCATACTCTAAAATTGCACTGCCAACAAAACTTGGCCAGTTAATGGGAGACAGATTCATGGTAATTGTAACAGCAGAAGATGTATTATGTCGTCGCTGTGCTTCTTTAATAATCCGTCTTGATAAATTGGAAGTTGATACAGAAATTGTAAAGAAAGCACTAATAGgttatttgaaaatgaaatatcattTGTATGAGGATGAAGAGAGTGGACCACACATGTTGAATTCCTCATATATGCATGGATTGGAAGAAGAGATACCAGATGGCACAGACAGTGGTGACCAGATGATTTCCCATGCTTTAAAAGACATCAAGTCTGTAGCTTCAGAAGATGAGGGTGGTGCTTCTCACTTACACATCAAACAGGAAGCAGCTGATGAAAAAGAAATTCAGTGTTTTGACCGTATAGATGTCACAGGATACAAATGTGTATCATGTCAGTATAAAACCACAAGTTCTGTCATTTTTATGGAGCATTTAAAGATCCATTCCAAAGAGATGTATTTCAAGTGCTCAAATTGTAATGAAGAATTCCGCAGTCACTGGGAAATTCAGGAGCATATCGAGGATGTTCATCACTCACATTTACAGGAAAATTCAGAAAGTGATAACACAGGAACTAGGACTCCTCTCACATTTTATGAATGCAATATCTGTAAATTTCAGAGTCCTCACAAAACAGTTTTTGACAGTCATGTTCTGAAACATGGCAGGGCAGTATTTTATAAGTGTTCAGTTTGCTCAAAACAACTGAGATCAAAAGCATTGCTGAAGAAGCATGCAAACAGTCACAGAATCTTCAAATGTGGACTGTGTAACCTGACTTTTAAAGAAAAGAGCAGCTTACTGAAGCATTTCGTGCAGCATAGAATTTCAAAAACTCTCCAGGTGAAAGAGGAGGAGCAGAGTATGGCACAGTCACAGGACAGACTGGAAGAGCAGGTACAGGATGATTGGCAGACTCGTGACCAGGACAAAGTGGAACAGTTGCTGGAACAGTTGCATGCTGAAGATCCCATCAGCAAAGCTGAAGACAGAGACAATCAGAATCATCAGGATGAAAGCATGGAGGGAGATGAGCAAAAACCAACTTCAGAGACTAAAACTAATGGGAAACTGCAGTGTATTGAAAGTGAAGGCACTTTTGGGGAAGTTCAGAGACAAGTGGATGAAGCCTCCTTTCTGTTAGAAGATTCAGTTTTTGGTAAAGATGAGGATGAAAAGCTCTCAGAAGATATTAATGCAAATGAAGGGAGTGAAACCAGTGATTTCCTTACTGATCCTTCCAGTTACTTGCAAGATTTTCAATCAAGCAGTGAGAAGCAGGAGGAGAACCAGGGGATGGCTGAAAGTAAGGCCGAATTCCCTATTAATATGCTTCTTGATGGAAGTGCAGACAGTACAAAGAACATGGCTACTACATTATTGAAGAAGAGGGTCTATGTATGTTCTGTATGTGGTTTAAGGGCTTACACTGAGAGCCACATGAAGAGACATTTCAAGAGCCACATAGCAATTGAGAAAAAGATATATGAATGTCATATATGTAACAAGGTCTTAACAACCCGTAGTAACCTCAACAGGCACCTTTTGAATCACGAGAACTGTCCTGGCATGGTCACTTGCAAATTGTGCAATGAAGAACTGACTGATAGATTACATCTGAAGCAGCATCTTGAGGACCAGCATACAGGACCCCAGCACTGTTCATTTTGTAACATGGAGTTTCCAAACAAGAGAGCATTTAAAGAACATGAATTAACCCATCCAGAGAAAGGTATCCACCAGTGTGACATATGCCACAAAAGATTCCTGACTTCACTTCGACTGAGGACACATcttgaaaatattcacagcaGCCCTAAAGATGGAAAGACAgaggaaaaaatatacaaatgtcaCATCTGCTCCAAGATTTTAACAACATATCATAACTTAAAAAGGCATGTGAGGAATCATGAGAAAAGTTCAGGAAGTGCAAAATGTACTTTATGCTCCAAGGAATTGACAGATAAATTGCATCTGCGACAACATGTTGAAGAAATACATCCTGAAACTCACCAGTGTCCTTTCTGTCAAAAGGTTTTCTCAAATAAAAAAGTCTGCAAAGCTCATGAACTGACCCACCCAGAAAGATATGTATACAAATGTGACATGTGTGATAAGATGTTTCTCAATGAAACAAGATTAGAAAAACACAAGAATGTGTTTCACAGGGACCCTCACTGTCGATactgtgaaaaagaaataaaggatCCTACAAAGCTGTTTAATCATGAACGGAGACATGAGATGTATAAGAATAAATTTCCTTGTGAGCTGTGTCCCAAGGTTTTTCGCACACCATCGGGCCTCAAGTATCACATGTCTGTTCATACTGGAAAGTATGCAGTGTACTGTGAAGTATGTGGCAAAGGCATGCACTCAGAAATTGTGCTGGAAGAACACAAAGCTACGCACACGAAAGAAATCCGCTACACATGTGAGTTATGTGGGCGCAACTTTTCTTCCAATAGCACTTACAGAATGCACCGCAAATGGCATGATGACCCTTTACCTTACAAGTGCAAGACCTGTGATCGCAAGTTCAAACACACCTCCATCCTAGCAGTGCATATGAGACGTGCCCATACAGGAGAGCGTCCTTACAAGTGTCCACATTGCCCGTATAGCTTCAGTGTGAGCAGCACTCTACAGAAACACATAATTTTGCACACCAAGAAATACCCCCACAACTGCAAGCTCTGTGGAAAAGGGTTCACCACTCGTACTAAGATTGCAAGACACATGGCAAAAGTACATAATGATTTTGACATGCTCAATGCTAAGCCCACACCATGCCAGTACAAGATGGTGCTCAAACCGAGTGAGCTGTTGTTAGCAGAATCCAAGGATTCTGTGCCCAAACAGGAAGAGAAACTTCCTGAGCCAAAGTTTGAGGAATCGGTAGCTGAGGAACACATTGTAGAGCCTGCACAGACACTCTTCTTGTTTCAGTAA
- Protein Sequence
- MVSPRRCRARPNKPSLLKHSLYHVSCNKALPEDTGTYLNFNMGSVRSFKTEQLHMVKRKWMPSSDGYDPELKLKEDARNYTSASQCFICDSVVSGRATPLLMGIAPYSKIALPTKLGQLMGDRFMVIVTAEDVLCRRCASLIIRLDKLEVDTEIVKKALIGYLKMKYHLYEDEESGPHMLNSSYMHGLEEEIPDGTDSGDQMISHALKDIKSVASEDEGGASHLHIKQEAADEKEIQCFDRIDVTGYKCVSCQYKTTSSVIFMEHLKIHSKEMYFKCSNCNEEFRSHWEIQEHIEDVHHSHLQENSESDNTGTRTPLTFYECNICKFQSPHKTVFDSHVLKHGRAVFYKCSVCSKQLRSKALLKKHANSHRIFKCGLCNLTFKEKSSLLKHFVQHRISKTLQVKEEEQSMAQSQDRLEEQVQDDWQTRDQDKVEQLLEQLHAEDPISKAEDRDNQNHQDESMEGDEQKPTSETKTNGKLQCIESEGTFGEVQRQVDEASFLLEDSVFGKDEDEKLSEDINANEGSETSDFLTDPSSYLQDFQSSSEKQEENQGMAESKAEFPINMLLDGSADSTKNMATTLLKKRVYVCSVCGLRAYTESHMKRHFKSHIAIEKKIYECHICNKVLTTRSNLNRHLLNHENCPGMVTCKLCNEELTDRLHLKQHLEDQHTGPQHCSFCNMEFPNKRAFKEHELTHPEKGIHQCDICHKRFLTSLRLRTHLENIHSSPKDGKTEEKIYKCHICSKILTTYHNLKRHVRNHEKSSGSAKCTLCSKELTDKLHLRQHVEEIHPETHQCPFCQKVFSNKKVCKAHELTHPERYVYKCDMCDKMFLNETRLEKHKNVFHRDPHCRYCEKEIKDPTKLFNHERRHEMYKNKFPCELCPKVFRTPSGLKYHMSVHTGKYAVYCEVCGKGMHSEIVLEEHKATHTKEIRYTCELCGRNFSSNSTYRMHRKWHDDPLPYKCKTCDRKFKHTSILAVHMRRAHTGERPYKCPHCPYSFSVSSTLQKHIILHTKKYPHNCKLCGKGFTTRTKIARHMAKVHNDFDMLNAKPTPCQYKMVLKPSELLLAESKDSVPKQEEKLPEPKFEESVAEEHIVEPAQTLFLFQ
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01289152;
- 90% Identity
- iTF_01289152;
- 80% Identity
- -