Rluc022609.1
Basic Information
- Insect
- Reticulitermes lucifugus
- Gene Symbol
- bab2
- Assembly
- GCA_026260175.1
- Location
- JAKCWW010002929.1:42879-51297[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 0.00081 1.1 9.7 0.1 2 37 169 203 168 210 0.76 2 4 4.9e-11 6.6e-08 32.8 0.0 3 41 220 257 218 259 0.90 3 4 0.12 1.6e+02 2.8 0.0 23 37 294 308 278 316 0.76 4 4 1.7e-09 2.3e-06 27.9 0.0 4 37 336 369 333 373 0.92
Sequence Information
- Coding Sequence
- ATGAAATGTAATTCCTTTTTTCTTCAGGATCTCTTGACCAATAGTGAAGACTCTCATCCCTATATAATTTTAAGTGAAATGAGTTTTGATGATGTAAGATCAATTGTTGAGTTTATATATCATGGAGAGCTGAATGTTGGTGCTGATCATTTCGCATCAGTACTGAAAATAGCTGAAGAGCTGCAAATAAGGGGCCTTATGGAAGTCAGTAATTATTTACCAACATTGGAAAATGAAATTAATGGTGAATCTAGTCCAGAAGCTCTATCTTCAGCTCCAGCACTGGAAGGAAATCATAATTCAAGCCAGTGTGTAGATGTGTTGCCAGATGTTTCACAGACAGAGTCACTAGACATTTTCATGGAAGCATCTGAAAGTGTACATGAGGAGCCTTCAACAATAAATACAAAACTGGAATCAAAGGAACAAACACAGACTGAGAAGAAGGACGAAGAAGAGAAAAAGAAGAAACACAGAAGGGAAGCAAGTAAAAAGTATTACAGCGAGGACATGATGTTGGCAGCATTAGAGGATCTCCGAGCAGGGCGAAATCTTGTAGAAACAGCTGCAACCTATCATATTCCTCGCTCAACTCTGTATGTGAGAGCTCGAGCACATGGCATTGCCCTTTCCATCACCAGACAGGAACATTCTGGTGAAAGAGTACAAGCTGCAGTCCAAGCTGTTGCAGATGGTGCAAGTTTGCAGCAGGCAGCTGAACTCTTTAAGATTCCAAAGACAGTGCTTTGGCGACGTGTACAGAAGGAAATGGGGAGTTACGCAATGAGTTGTCGTGCTAGGATGAAGCAGTCATATGGCTTAGATAAGAAACAAGCAGCAGTAAAGGCACTGGAAAGAGGAGAGAACCTCACTAAAGTGTCCCACCAGTTTCAGATACCAAGAACAACTTTGTTTCGTGAGAAAGCACGTTTGGTAGAAGCTGGAAGACTTCCATGGACCTGTCTGCGAAAACGGAATCCTGGCATTGGTGGCTTCAAGCAGCACAGACTTAGTGAAGCTGTAGCAGCTTGTAAAGAAGGGAAAATGTCACAGGCTGTGGCTTCTCTCACCTTCCAGGTTCCTAAAACCACGATCTGGCGTAAACTTCAGCAGTGTTCGAAAACAGAATTAGCTGGTTCTGAAGATAATGAAGCTGATACTGCTGCAGCCCAACTGCAGGAACGCACAGAATTTGCATTTAGTGAGGTTTCATCGCAAATTCCAGTCACATATATTGATGAATCAGATTTCCCTGAAGCCTCTCTCATTATTCTTACTGCTGGTAATAGTGAAGGTATGGAAGAGCAGATTATTGTCAATAGGGATTCTGTACCCAGTGAAGACCAAGAATCCAAGAACCATCCAGTGAAAGAAGTGCCTCCAGCAGTGAATGGTCCCAGCCAAAATCCTGATTTAGAAACATAG
- Protein Sequence
- MKCNSFFLQDLLTNSEDSHPYIILSEMSFDDVRSIVEFIYHGELNVGADHFASVLKIAEELQIRGLMEVSNYLPTLENEINGESSPEALSSAPALEGNHNSSQCVDVLPDVSQTESLDIFMEASESVHEEPSTINTKLESKEQTQTEKKDEEEKKKKHRREASKKYYSEDMMLAALEDLRAGRNLVETAATYHIPRSTLYVRARAHGIALSITRQEHSGERVQAAVQAVADGASLQQAAELFKIPKTVLWRRVQKEMGSYAMSCRARMKQSYGLDKKQAAVKALERGENLTKVSHQFQIPRTTLFREKARLVEAGRLPWTCLRKRNPGIGGFKQHRLSEAVAACKEGKMSQAVASLTFQVPKTTIWRKLQQCSKTELAGSEDNEADTAAAQLQERTEFAFSEVSSQIPVTYIDESDFPEASLIILTAGNSEGMEEQIIVNRDSVPSEDQESKNHPVKEVPPAVNGPSQNPDLET
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00396213;
- 90% Identity
- iTF_01289113;
- 80% Identity
- iTF_01289113;