Rmax014714.1
Basic Information
- Insect
- Resseliella maxima
- Gene Symbol
- -
- Assembly
- GCA_029041755.1
- Location
- JAQOWM010000637.1:330304-331920[-]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 0.00059 3.2 8.5 0.1 25 46 164 185 151 191 0.81 2 4 0.0019 10 6.9 0.1 21 45 188 212 185 216 0.90 3 4 0.037 2e+02 2.8 0.1 15 44 260 289 247 293 0.82 4 4 0.00088 4.7 8.0 0.0 21 44 294 317 291 324 0.91
Sequence Information
- Coding Sequence
- atgacctcaataacaaaaaaaattgcacacagTGCTGTTTCCGCTCCGTTGAAATCGGCCAGTGATATATCAgtgataaaaaatcattccACAATAATTGATTCAGAGCTACAGGCTGAAATGATTGAAGTGGTTCCAGAGTTGCCGTTCACAAATGACAGCGAAGACGATTTCAGTGAGTACagtgaagatgaaaatgatgcaGCTATCGAACACAAAAATCCATTCCAAttgaataatgatgatgatgacgctGAACCATTCGACGAATATGCTTATCAAGTGATGTCAAACCACAATGAGCCGCAAACTATTTGGTTTGACAATTCTCAATTGAAATCGTTACCGTTGAACAAATCAACGGGTGACACCAGCAACAATAGTGATGTGATATTaatcgatgatgatgatagtgatgatgattttaatgaaaatagtaacGGAGGCCTTACACATGAACCGCCCGATAATATAGCTGAACAAAAAATCTACTCATGTGATATCTGCCACAGTAAGCTATCGAGTAGCTACAATTTGAAACGTCACAAAATGATTCACAGCGGTGAAAAACCGTTCGAATGTGACATTTGCAAGCGACGATTTCGCGAACAAAGTGACTTACGGAAACATAAAAAGGTTCATAATAATGGTACAATAATGAGATGTTTGATATGCAAACGTAATCAACCAACGAATCGCAATTCGAGCAAATGTATTTCATGTGAAAAGCAGGAAATAGCAAAACGATATCATGATTCAATTACCGATGACCTTGTGCCGCGCATCGATGCCAATAATAAAAAAgcatttatatgcaaatattgtgaTAGAGCATTTGGTAGTAGTTCCAATTTAAAACGACATTGTATGATTCATACGGGTGAAAAACCATTCACTTGCCCTGATTGTAAACGACCATTTCGTGAGATGAGcacattgaaaaaacatttgatcacgcatcgaaaacaaaatggtttcaatgcattgaaatcaattACCATTTGTCGTGGCACCGAAAATCTCATGAATCACATAACCACCGTTCATCGGCCGAATAATGCAAAAACCAATGGATCATCCGGAACACGTCAAATACGAAAATTGTCGAAATCACCACCACCACTCATTCCAATCAATAAAGCCGCCTTTAACTACTTGAATGCCAAAAGAATTTAG
- Protein Sequence
- MTSITKKIAHSAVSAPLKSASDISVIKNHSTIIDSELQAEMIEVVPELPFTNDSEDDFSEYSEDENDAAIEHKNPFQLNNDDDDAEPFDEYAYQVMSNHNEPQTIWFDNSQLKSLPLNKSTGDTSNNSDVILIDDDDSDDDFNENSNGGLTHEPPDNIAEQKIYSCDICHSKLSSSYNLKRHKMIHSGEKPFECDICKRRFREQSDLRKHKKVHNNGTIMRCLICKRNQPTNRNSSKCISCEKQEIAKRYHDSITDDLVPRIDANNKKAFICKYCDRAFGSSSNLKRHCMIHTGEKPFTCPDCKRPFREMSTLKKHLITHRKQNGFNALKSITICRGTENLMNHITTVHRPNNAKTNGSSGTRQIRKLSKSPPPLIPINKAAFNYLNAKRI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01288555;
- 90% Identity
- iTF_01288555;
- 80% Identity
- iTF_01288555;