Qclu002026.1
Basic Information
- Insect
- Quadriops clusia
- Gene Symbol
- -
- Assembly
- GCA_033557875.1
- Location
- JAWQRP010000350.1:2084-3235[+]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 8 0.0012 4.9 8.2 0.5 2 44 100 140 99 143 0.80 2 8 0.00016 0.65 11.0 0.1 21 47 145 171 137 176 0.86 3 8 0.0045 19 6.4 0.0 22 46 175 199 171 204 0.89 4 8 0.095 4e+02 2.1 0.1 22 45 205 228 200 239 0.83 5 8 2.4 1e+04 -2.4 0.0 23 44 234 255 229 259 0.77 6 8 0.03 1.2e+02 3.7 0.1 21 44 288 311 284 316 0.79 7 8 0.024 1e+02 4.0 0.3 22 46 317 341 312 346 0.87 8 8 0.039 1.6e+02 3.3 0.1 22 45 345 368 340 371 0.85
Sequence Information
- Coding Sequence
- ATGGCGTCCTCTTCAAAAGCAATTAAGCGAGAAAGCCCCTTAAAGCATCTactatattacaaattaatggTTTGCTGCAGAATCTGCGGGGAAAGGTTTGAAGATGAGCCGGAGTTCGAAACGCACGCGAGAGCAGCGCACGAGGAGGAGGCGCGAACTATCCCGGATGTGACGTCACCCAGGGAAGACTTGATCTGCGAGATCAGCCCTGAGGAACTACCTATCAAAATGGAGAACGACGGATTCGACGGTAAaacagaagaagaagaagaagaagactgCAAACCCTCGATGAAGAAGAGGAAACGATCTGATAAACCGAGGGGTAAAGGAGAGAGAGATAGGGGTAAAGGAGAACCAGTTAGTTGCCCGCATTGCGATAAGGTGTTCAAATACAAGAGCAAACTAAAGCCGCACTTGGCGTCCCACACCGGTGAAAGTCCGGGTGTTTGCAACGTTTGCGGGAAAACGTTCAACCATAAGCGGAGCCTCCACAGGCACCTCCAGCTGCATCGGACCGACAATAAACCTTACTCTTGCTCTCTCTGCGAGAAAACTTTCAGGTCCAAGAGCAACTTGTTCCAGCATATGGAGGTGACCACGCATAGCGACAACAGACCTTATCTTTGCCAAATCTGCCAGAAGAAATTCAAAGAGAATTCCGCTTTAACCAAGCACCTGAAGACCCACTCGGAGGAAAGAGACTTCTCCTGCCATTTCTGCGGCAGCTGCTTCAAGACCAATTCGGCCTTGAAGGTGCACCTGAGGACTCACGACAAAGAGGGTTCTTTTCCTTGCAGATTCTGCGAGAAAGCCTTCGCCATCAAGAGGAGTTGGGAGGTCCACGAGAGGATCCATACCAACGAGACCCCATTCACTTGCCCTCACTGCGAGAAGAAGTTTAGATCAGAATCTATCATGAAGGTCCACATCAGAATCCACAACAAAGAAGAACGGTACACTTGCGGGGTTTGCTGCAAGAGGTTCACTGACAAAGCCAATTATAAAAGACACCTTAGGGTTCACACTCAAGAGAAGAAGTATGTTTGttccatttgtttcaaaagGTTCAACCACAGCAATTCACTAAAGGCTCATATGGGGGTCCACGTGGACGACCATATGGATAATGGAACAAAAACGGATTCTTAG
- Protein Sequence
- MASSSKAIKRESPLKHLLYYKLMVCCRICGERFEDEPEFETHARAAHEEEARTIPDVTSPREDLICEISPEELPIKMENDGFDGKTEEEEEEDCKPSMKKRKRSDKPRGKGERDRGKGEPVSCPHCDKVFKYKSKLKPHLASHTGESPGVCNVCGKTFNHKRSLHRHLQLHRTDNKPYSCSLCEKTFRSKSNLFQHMEVTTHSDNRPYLCQICQKKFKENSALTKHLKTHSEERDFSCHFCGSCFKTNSALKVHLRTHDKEGSFPCRFCEKAFAIKRSWEVHERIHTNETPFTCPHCEKKFRSESIMKVHIRIHNKEERYTCGVCCKRFTDKANYKRHLRVHTQEKKYVCSICFKRFNHSNSLKAHMGVHVDDHMDNGTKTDS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01287435;
- 90% Identity
- iTF_01287435;
- 80% Identity
- iTF_01287435;