Qclu000504.1
Basic Information
- Insect
- Quadriops clusia
- Gene Symbol
- RpS23
- Assembly
- GCA_033557875.1
- Location
- JAWQRP010000064.1:34246-41929[+]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 5 0.13 5.4e+02 1.7 0.1 26 46 114 135 108 137 0.78 2 5 0.0047 20 6.3 0.0 20 47 138 165 134 172 0.84 3 5 0.0035 15 6.7 0.1 22 46 168 192 163 195 0.89 4 5 9.5e-05 0.4 11.7 0.2 21 52 195 226 191 226 0.89 5 5 0.0029 12 7.0 0.0 21 48 223 250 221 253 0.91
Sequence Information
- Coding Sequence
- atggaTAATGATGCAGATGTTGACTATGATTCTGCCTTGGAAccacatattattattaatgattctGAAGATGACGACAACTACTCAGACACACAACAATCGGATCCCTTGGAAATAGACGAAACAAAAATCGGTCCTGAAATTTCTCTAATTCCCATAAAAAAGTGTAAAGGTATCAGCATAATCCCCTGTAATGGACAGAAGGAAGGTTTGGAAACGTCAGTGCATAAAGTGAGATCACCTCGGCAACAGGTTCGGCTGGTGTCCAAGGAAGAAGCTTTGGCTGCCGAACAAGAACTCCAAAATACAATAATCAAACGCAAGTCTCTACCTTTAGAAAAGTGTCCTGTTTGCAAAAAGTTCTTCAGACGAATGAAAACGCATCTCCAAAAGCATTCAGAGATTCACCAAGACTCTAGTAATCCCCTAACTTGCCAATTTTGCAGCAAGGTTTTTAACACGGGAAGCAATTTAAGCATCCACATGAGGACTCACACTGGGGATAAACCATACATTTGTACTGTGTGCCATAAAGGTTTTGCTCAATCTTGCAACCTGGTGAACCACATGCGTATCCATACAGGGGAGCGACCGTTCAAATGTCCCCATTGCGATAGGGCATTCACGCAATCTGGCAACCTCAATAATCACATCCGATTGCATCGAGATGAAAAACCGTTCAAGTGCCATTTTTGCGAAAAAGCTTTCACTCAGTCTGGAAATTTGAATTCgcatattaaaaacaatcacAAGTACATGAATGAAGTTAACGGTAAACCAAGAGGTTTGAGAACAGCCCGTAAACACGTGAACCACCGCCGTGAACAAAAATGGTCGGATAAGGACTATAAGAAGGCCCATTTGGGAACCCGATGGAAGGCTAATCCTTTCGGAGGAGCGTCTCATGCTAAAGGAATCGTCTTGGAAAAGGTAGGAGTTGAAGCCAAACAGCCTAACTCTGCCATCCGCAAGTGTGTCAGGGTCCAACTGATCAAGAACGGCAAGAAAATCACCGCATTCGTTCCACGGGATGGTTGCTTGAATCACATTGAAGAAAACGATGAAGTCCTGGTCGCAGGTTTCGGCCGTAAAGGTCATGCTGTAGGTGATATTCCCGGAGTTAGATTCAAGGTTGTCAAGGTAGCCAACGTGTCCCTTCTCGCCTTgtacaaagaaaagaaagaaaggcCAAGATCGtaa
- Protein Sequence
- MDNDADVDYDSALEPHIIINDSEDDDNYSDTQQSDPLEIDETKIGPEISLIPIKKCKGISIIPCNGQKEGLETSVHKVRSPRQQVRLVSKEEALAAEQELQNTIIKRKSLPLEKCPVCKKFFRRMKTHLQKHSEIHQDSSNPLTCQFCSKVFNTGSNLSIHMRTHTGDKPYICTVCHKGFAQSCNLVNHMRIHTGERPFKCPHCDRAFTQSGNLNNHIRLHRDEKPFKCHFCEKAFTQSGNLNSHIKNNHKYMNEVNGKPRGLRTARKHVNHRREQKWSDKDYKKAHLGTRWKANPFGGASHAKGIVLEKVGVEAKQPNSAIRKCVRVQLIKNGKKITAFVPRDGCLNHIEENDEVLVAGFGRKGHAVGDIPGVRFKVVKVANVSLLALYKEKKERPRS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01287558;
- 90% Identity
- iTF_01287558;
- 80% Identity
- iTF_01287558;