Qclu030328.1
Basic Information
- Insect
- Quadriops clusia
- Gene Symbol
- -
- Assembly
- GCA_033557875.1
- Location
- JAWQRP010017001.1:1183-2595[-]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 0.047 2e+02 3.1 0.0 23 52 96 125 91 127 0.84 2 11 2e-05 0.085 13.9 0.1 23 46 124 147 119 154 0.88 3 11 0.48 2e+03 -0.1 0.1 21 32 150 161 147 177 0.74 4 11 0.016 65 4.6 0.0 21 47 178 204 170 211 0.84 5 11 0.21 9e+02 1.0 0.0 21 44 206 229 195 233 0.79 6 11 0.012 50 5.0 0.0 18 43 230 256 226 260 0.82 7 11 0.0022 9.3 7.3 0.0 21 47 262 288 256 294 0.82 8 11 0.13 5.7e+02 1.6 0.0 16 44 284 313 282 317 0.76 9 11 2.1 8.8e+03 -2.2 0.0 27 45 326 344 324 352 0.81 10 11 0.14 5.9e+02 1.6 0.1 24 52 353 381 346 383 0.83 11 11 0.0048 20 6.3 0.0 21 44 378 401 374 405 0.90
Sequence Information
- Coding Sequence
- ATGGCCTCAAACTTGAGGTCAGGCGAGATAAAAGAGGAAACCCTCGGACATTCAGACGAAGAAGCTGACCTCAGCCGCAAACCACACAATTCAGAAGACGAAGGTTCACCTCAAAACCCACCAGAGACCGACCAAAACCCTATGGAGTTCCTCAAAGTGGAATTGTTAGACCCTCCTGCTGAGAAAGAGGCAGATGACCAAGACAAGTTTCCTTGCACCTTCTGCCAGAAGCGGTTCGAAGACAAAGAGGGCCTCAACAGGCACATCATTCTGCATAGCAAGCTAAAACCGCGTACTTGCTTCGTTTGCAATAAAGCATTTACCCAGCATAGCAGCCTCGCAGAGCACATGAAGACGCACGAAGGCCTTAAACCCTTCGTTTGCCCCATTTGCCCCAACAGCTTCATCAAGAGCAGTGATCTCAGACGGCACCTGAAGGTTCACAGTGGGGAAAGACCCTTCAAGTGCCCCACCTGCGACAAGGGCTTCGTAACAAACGATATCCTGAAGGTGCACCTCAAGACGCACAGCACCGAAAGACCCTTCTCTTGCTCCATTTGCTCGAAGGCGTTCGCCAAGAAAGGCGACTTAAAATCGCACTTAAGAACCCACAGCGGGGACAAACCGTATTCGTGCGAGCTTTGCATGAAGCGGTTTGCGAAAAGCGGCGACCTCAACATTCACCTCCGCTCGCACAGCGGGGAAAAGCCGTACACCTGCGAGATGTGCCAAAAGGGCTTCACGAAGAGCGGGGATTTGAAGATACACTACCGGACGCACAGCGGGGAGAAACCGTACACCTGCACCGTTTGCTCGAAAGGTTTCACGAAGAACAGCGACCTCAAGCGGCACTCGCGCATCCACAGCGGCGAGAAACCGTACGCTTGCAACGTTTGCGACAAGAAATTCGGCGACAACGGGAAGCTCAAGGCGCACTTGAAGTCGCACAACGGCGGGGAAAAGGAGTTGTTCCCTTGCAGGATCTGCATGAAGAGCTTCCGGTCCTTGAATTACCTAAATGGGCACTTGAGGAAGCACAACCTTAGCGGCGAGAACGAGTTTTGCTGCTCGTTCTGCCAGAGAAAGTTTGGGACAAGCGCGCAACTAAGAGTGCACTTGAGGATGCACACCGGGGAGAAGCCATATGTTTGCACCGTTTGCCACAAGGGGTTTTCGCAAGTCTCCAATTTGAAGACTCATTTCAAGAAGCACTGTcaagaggaggaagaggaagatGAAGAAGAGGGAGAAGAAGGTGGAGGAACAGAAGGGGAAGATGGTATGCAGGAGGACGAGGAAGAGGAAGATGAACAAGAGAAGGAACAGGAAGAAGATGCAATAGAAGAGGAAAAAGTGAATATTGGGGGAGAAGATGTCAacacaaaagaagaagaggaagatgaTGATGAATAA
- Protein Sequence
- MASNLRSGEIKEETLGHSDEEADLSRKPHNSEDEGSPQNPPETDQNPMEFLKVELLDPPAEKEADDQDKFPCTFCQKRFEDKEGLNRHIILHSKLKPRTCFVCNKAFTQHSSLAEHMKTHEGLKPFVCPICPNSFIKSSDLRRHLKVHSGERPFKCPTCDKGFVTNDILKVHLKTHSTERPFSCSICSKAFAKKGDLKSHLRTHSGDKPYSCELCMKRFAKSGDLNIHLRSHSGEKPYTCEMCQKGFTKSGDLKIHYRTHSGEKPYTCTVCSKGFTKNSDLKRHSRIHSGEKPYACNVCDKKFGDNGKLKAHLKSHNGGEKELFPCRICMKSFRSLNYLNGHLRKHNLSGENEFCCSFCQRKFGTSAQLRVHLRMHTGEKPYVCTVCHKGFSQVSNLKTHFKKHCQEEEEEDEEEGEEGGGTEGEDGMQEDEEEEDEQEKEQEEDAIEEEKVNIGGEDVNTKEEEEDDDE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01287397;
- 90% Identity
- iTF_01287397;
- 80% Identity
- iTF_01287397;