Basic Information

Insect: Quadriops clusia
Gene Symbol: -
Assembly: GCA_033557875.1
Location: JAWQRP010002466.1:2873-11839[+]

Transcription Factor Domain

TF Family: zf-GAGA
Domain: zf-GAGA domain
PFAM: PF09237
TF Group: Zinc-Coordinating Group
Description: Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 24 0.013 56 4.9 0.0 20 46 672 698 662 703 0.86

2 24 0.00075 3.1 8.9 0.1 22 46 702 726 699 728 0.88

3 24 1.3e-05 0.056 14.4 0.1 21 48 729 756 727 761 0.87

4 24 0.00022 0.93 10.5 0.1 23 52 759 788 755 790 0.93

5 24 0.0041 17 6.5 0.0 23 47 787 811 785 816 0.91

6 24 0.088 3.7e+02 2.2 0.1 22 44 814 836 811 841 0.89

7 24 2.8e-05 0.12 13.4 0.0 21 47 841 867 838 872 0.86

8 24 0.00013 0.56 11.2 0.1 21 52 869 900 866 902 0.94

9 24 0.077 3.2e+02 2.4 0.0 22 46 926 950 914 956 0.84

10 24 0.0094 39 5.3 0.0 22 47 954 979 949 984 0.85

11 24 0.0051 21 6.2 0.0 21 52 981 1012 978 1013 0.88

12 24 0.0011 4.6 8.3 0.0 21 51 1009 1039 1007 1040 0.87

13 24 0.00028 1.2 10.2 0.0 21 50 1037 1066 1034 1068 0.87

14 24 6.7e-05 0.28 12.2 0.0 21 52 1065 1096 1061 1097 0.88

15 24 0.037 1.5e+02 3.4 0.0 21 52 1093 1124 1090 1125 0.89

16 24 0.00035 1.5 9.9 0.1 21 46 1121 1146 1108 1152 0.83

17 24 0.011 44 5.2 0.1 22 46 1150 1174 1147 1179 0.86

18 24 0.00034 1.4 9.9 0.0 22 53 1178 1209 1175 1210 0.88

19 24 0.00046 1.9 9.5 0.1 20 51 1204 1235 1203 1238 0.84

20 24 1.5 6.2e+03 -1.7 0.0 22 45 1234 1257 1232 1265 0.79

21 24 1.9 8e+03 -2.1 0.0 21 46 1261 1286 1255 1293 0.82

22 24 0.74 3.1e+03 -0.7 0.0 21 46 1289 1314 1278 1321 0.82

23 24 0.078 3.3e+02 2.4 0.3 21 52 1317 1348 1309 1349 0.89

24 24 0.12 5.1e+02 1.8 0.0 23 46 1347 1370 1343 1374 0.90

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	24	0.013	56	4.9	0.0	20	46	672	698	662	703	0.86
2	24	0.00075	3.1	8.9	0.1	22	46	702	726	699	728	0.88
3	24	1.3e-05	0.056	14.4	0.1	21	48	729	756	727	761	0.87
4	24	0.00022	0.93	10.5	0.1	23	52	759	788	755	790	0.93
5	24	0.0041	17	6.5	0.0	23	47	787	811	785	816	0.91
6	24	0.088	3.7e+02	2.2	0.1	22	44	814	836	811	841	0.89
7	24	2.8e-05	0.12	13.4	0.0	21	47	841	867	838	872	0.86
8	24	0.00013	0.56	11.2	0.1	21	52	869	900	866	902	0.94
9	24	0.077	3.2e+02	2.4	0.0	22	46	926	950	914	956	0.84
10	24	0.0094	39	5.3	0.0	22	47	954	979	949	984	0.85
11	24	0.0051	21	6.2	0.0	21	52	981	1012	978	1013	0.88
12	24	0.0011	4.6	8.3	0.0	21	51	1009	1039	1007	1040	0.87
13	24	0.00028	1.2	10.2	0.0	21	50	1037	1066	1034	1068	0.87
14	24	6.7e-05	0.28	12.2	0.0	21	52	1065	1096	1061	1097	0.88
15	24	0.037	1.5e+02	3.4	0.0	21	52	1093	1124	1090	1125	0.89
16	24	0.00035	1.5	9.9	0.1	21	46	1121	1146	1108	1152	0.83
17	24	0.011	44	5.2	0.1	22	46	1150	1174	1147	1179	0.86
18	24	0.00034	1.4	9.9	0.0	22	53	1178	1209	1175	1210	0.88
19	24	0.00046	1.9	9.5	0.1	20	51	1204	1235	1203	1238	0.84
20	24	1.5	6.2e+03	-1.7	0.0	22	45	1234	1257	1232	1265	0.79
21	24	1.9	8e+03	-2.1	0.0	21	46	1261	1286	1255	1293	0.82
22	24	0.74	3.1e+03	-0.7	0.0	21	46	1289	1314	1278	1321	0.82
23	24	0.078	3.3e+02	2.4	0.3	21	52	1317	1348	1309	1349	0.89
24	24	0.12	5.1e+02	1.8	0.0	23	46	1347	1370	1343	1374	0.90

Sequence Information

Coding Sequence: ATGGCCtcaaaactaacaaaaaacgCGGACGAAGCGCCCCCGCATGGTAACATATACCAGatcaaaattaagaaaatccAATCGCTGATGGAACCGCGcaagaatgaaaatataacTTGCGAAGATTCGGGCACTCAGATTAAAGATTACTTAGATCTAGCAGGCGAAGACGTGCCAAACAACCGGAAGCGGAAACCGGAAACCCCGGTTCTTCCAAAGAATAGCCccaggaagaagaagaacctTGAGAGTATCCTTCAGAGCTTGAAGAATGTCGCAAATGAAGAGTGTAAAGTAAATGAAGGATGCAGAGGCAGTGAGGATTGCAGTAGAAATGAAGAATGTAGAAGAAATGAAGAATGCAGTAGAAATGAAGAATGCAGAAGACATGAAGTATGCAGAAGACATGAAGAATGcagtagaaataaaacaagtgaaggatgtaaaataaatgaatctaACACAAATGAAGAATGCAAAGCAAATGAACAATGCATAACAAATGAAGAATGCAAATCAAACGAAGAAagtgaaacaaacaaaatagttGAAGGAAATGAGGCAAAGAATCACAAAAATTTGGCTGGTTGTGAAAGAAATCGAATTGAAAGTAAAGAAAGGACAATTGTAGgagaagaatataaaatagaaggagaagaaagtGTAATTGAAAGAGAAGAAAGTATAACTGGaagtaaagaaattttaactgAAAATACAGAAAAGCAAAGTAACCGGCCACAAAATGGTAAGGATGACAAGAAACAAACCCAAAGTGAAGAAAGCTCAAAGgcgattattaaaaaagaaaacataaatctGGAGGCTGAAAGATGTGAGATGGAAATAGAGTCTTCATCTCATAAGAGACCAACAAATAAGGGAgacaaaatgataataaaaggTAATGAAACTAAAAGCAAcctaaacaaaactaaaaacaatgcGGATAACACAGGaagcaaaacaaacaacacagaaaccaaatcaataaaatcaaaacccACAGAAGCAAAAAGTCAAAGTAAAAGATTAATTGAAAGAAGAACAAAACTGAACACAAATTCAACCAAACAGGAAACAAGAACTTCTCCAAACACAAGAACAAAAAATCAGAATACCAGAATTACAAATCAGAATAACAGAATAATTAATGAGAATACAAGAAACCAGGACACAACAACAAATCAAACTACAACAACACCAAATCAGAACACAtccaataataacaaaacgaAACCAAAAGTTACGGGAACAAAACCAAATCAAGTCAATGGAAGAAAGCATAATGTAGAAACAGTTCCTATAAAAACTAATGCTAATAAAGAACGAAGCGAGAAAAAGGctgtagaaaaaaaaagtgaagaaCTTAGAATCGACGAATCAAGAAATGAAGAAGTAGGAAGTAAAGAGAGAGGAAGTGAAGAACTAGGaagtaaagaaagaagaagtgATGAGCAAGGAAGCGAAGAACAAATAAACGAAGCATTAAGAAATGAATCAATAAGTAACGAACCATTAAGAATTGAAGAACCGCTTACCCTAAGCTTCAACCATGAAGGGTTACTCTCAGGAAGTGAACACTCGTTAAAGACAGAAACAGACCTGTTAAAAGTGAGAACAGATTTGCTGAAGACTGGACCTGAAGACCCGATGAACGATGTTTCCGTGGCTGCGCTCTGTGTGACCAGCATCAAACAAGAAGTAATAGAGGAAGAAGAAGGCCAATTTGACGAAGATGACGTCCCCTTAATCCAGCTCATTTCCCGGGCTCATGGCCAGTTTGTGAAGCAAGAAGAGATGGACATAGAGGACAACAACATCGCGGAAAGCAACGCTTTGTACGATGACCTGGTGTCCTTGACGAGCATTGTAAAGGTTGAGGAACCAGAGGAAGTTCAACCGCTTGAAGACACCAGCAGGAGGACCAGGGGGATCATCTTAAAGATCAACACGAAAGCGAACGGGTTTAAGTTCTACACCCCCAAGCTGGTGGGCCGAAGGAGGAACCCCAATGCGAAGAAGCCCTTCAAGTGCACCATCTGCAAGAAAGGCTTCACGCAGAAGGGGAACCTGAAGAGCCACATGCAGATCCATACGGGGGAGAAGAACTTCTCTTGCTCGGTTTGCCACAGGAAATTCCGACAAAGTGGGAACCTGAAGAGCCACATGCAGATTCATACCGGGGAGAAGCCGTTCACCTGCGATGTCTGCAACAAGTGCTTCAGGCAGATCGGGAACCTGAGAAGCCACATGCAGGTTCACACGGGTTTTAAGCCCTACCAATGCGATTTATGCCACAAGACCTTTAGCCAGAGCGGCAACCTGAAGCAGCACATGCACATCCACACAGGCGCCAAGCCCCACAAGTGCGAGGTGTGCAACAAAACCTTCAGGCAGATCGGGAATCTTAAAGGCCATATGAAGCTCCATACAGGCGAGATGCCCTACCTATGCAAGATCTGCAACAGGCGATTCCGACAACTCGGAAACTACAAGAGCCACATGTTGACCCACAGTGGGGAGAAGCCGTACACTTGCGGGATCTGCAGCAAACAGTTTCGACAAATCGGGAACCTTCGGGGCCACATGTACATCCACACGGGGGAGAAGCCGTACCAGTGTGACGTGTGCCACAAACGTTTCCGACAGATCGGGAACCTGAAAGGTCACATGCACATGCACACGGGGGCGAAGCCCTACCAATGTAAGCAGTGTGGGAAATGTTTTAGACAAGTCGGGACCCTCAAGTGCCATATGCAGATACACACAGGCGAAAAGAAGTACAGCTGCAACATGTGCGGCAAGAGGTTCCGACAAATTGGGAACCTGAAGTCCCACATGAAGACCCACACGGGGGACAAGCCCTACACTTGTGAGCTGTGCAACCGCAGTTTCAGCCAAATTGGAAATCTTCGtgGCCATCAAAAAATGCACACGGGAGAGAAGCCGTTTCCCTGCTTGATGTGCGGCAAAACCTTCCGTCAAATTGGCAACCTCAAATCCCATATGCAGATCCACACGGGCGAGAAGCCCCACAAGTGTACCCTCTGCGAGAAGACCTTCCGACAGATTGGTAACCTCAAGTCCCATATGAAAATGCACACGGGTGAGAAGCCCTACAAGTGTGACTTCTGCGGAAAGCTGTTCCGACAAAGCGGCAACCTCAAAATTCATATGCAGATCCATACTGGGGAGAAGCCGTTCGCCTGCAGCTTGTGCCCCAAGACTTTTAGGCAGAGCGGCAACCTCAAGTCTCACATGCAGATCCACACAGGGGAGAAGCCGTACTCCTGTGACAAGTGCGGGAAGAGCTTCCGGCAGATCGGAACACTGAAGTCGCATCTGAAGATGCATTCAGGGGAGAAGCCCTACGAGTGTGAGCTGTGCCACAAGACGTTCCGGCAGATCGGGAATATGAGGAGCCACATGCAAATTCATACAGGAGAGAAAAgATATTCCTGCTCGTACTGCAACAAACAGTTCCGCCAAAGTGGCAACCTCAAGATCCACATGCAAATACACACGGGCGAGAAGAACTACGTGTGTGAGGTCTGCAACAAGCGTTTCCGACAAAGCGGGAACCTCAAGTCGCACATGCAGATCCATCAGGACGTGAAGCCGTTCGTCTGTGAGATCTGCAACAAGTGCTTCAAGCAGAGCGCCAACCTCAAGAGCCACCAGAAGATCCACGGCAATGAGAAACCGTACAGCTGTGACCTTTGCCAGAAGGCATTCACGCACAGCGTCTACTTGATGTACCACATGCGCACCCATACCGGGGAGAAGCCGTATGCCTGCGAGCAGTGCGGGAAAAAGTTCGCCCAGCGGGCCACCTTGAAGTCACACATGCAGACCCACACGGGCGAGAAACCGTTCAAGTGTGAGCTGTGTGACAAGCGCTTCACCCAGAAAGTGAACTGGAAGTCTCACATGTTCGTGCACACTGGGGAGAAGCCGTTCCCCTGCCACTTGTGCCAGAAGAGGTTCAATCAGAGGACCGTACTCAACAGGCACATCCAGATGCATAGCGGGATTAAACCGTTCACTTGCGAGTTCTGCAAGAAGAGTTTCACGCTTAAGGGGAACCTCAAGAAGCATATAGAGACGCATAATGCGGAGATGTTTGAGCAAAGGGTGAGCTTAAGGCTGCAGACGATGATAATAAAACCCGAGTTCCAAGGGCATTACGTGGATGTATTAGATTGA
Protein Sequence: MASKLTKNADEAPPHGNIYQIKIKKIQSLMEPRKNENITCEDSGTQIKDYLDLAGEDVPNNRKRKPETPVLPKNSPRKKKNLESILQSLKNVANEECKVNEGCRGSEDCSRNEECRRNEECSRNEECRRHEVCRRHEECSRNKTSEGCKINESNTNEECKANEQCITNEECKSNEESETNKIVEGNEAKNHKNLAGCERNRIESKERTIVGEEYKIEGEESVIEREESITGSKEILTENTEKQSNRPQNGKDDKKQTQSEESSKAIIKKENINLEAERCEMEIESSSHKRPTNKGDKMIIKGNETKSNLNKTKNNADNTGSKTNNTETKSIKSKPTEAKSQSKRLIERRTKLNTNSTKQETRTSPNTRTKNQNTRITNQNNRIINENTRNQDTTTNQTTTTPNQNTSNNNKTKPKVTGTKPNQVNGRKHNVETVPIKTNANKERSEKKAVEKKSEELRIDESRNEEVGSKERGSEELGSKERRSDEQGSEEQINEALRNESISNEPLRIEEPLTLSFNHEGLLSGSEHSLKTETDLLKVRTDLLKTGPEDPMNDVSVAALCVTSIKQEVIEEEEGQFDEDDVPLIQLISRAHGQFVKQEEMDIEDNNIAESNALYDDLVSLTSIVKVEEPEEVQPLEDTSRRTRGIILKINTKANGFKFYTPKLVGRRRNPNAKKPFKCTICKKGFTQKGNLKSHMQIHTGEKNFSCSVCHRKFRQSGNLKSHMQIHTGEKPFTCDVCNKCFRQIGNLRSHMQVHTGFKPYQCDLCHKTFSQSGNLKQHMHIHTGAKPHKCEVCNKTFRQIGNLKGHMKLHTGEMPYLCKICNRRFRQLGNYKSHMLTHSGEKPYTCGICSKQFRQIGNLRGHMYIHTGEKPYQCDVCHKRFRQIGNLKGHMHMHTGAKPYQCKQCGKCFRQVGTLKCHMQIHTGEKKYSCNMCGKRFRQIGNLKSHMKTHTGDKPYTCELCNRSFSQIGNLRGHQKMHTGEKPFPCLMCGKTFRQIGNLKSHMQIHTGEKPHKCTLCEKTFRQIGNLKSHMKMHTGEKPYKCDFCGKLFRQSGNLKIHMQIHTGEKPFACSLCPKTFRQSGNLKSHMQIHTGEKPYSCDKCGKSFRQIGTLKSHLKMHSGEKPYECELCHKTFRQIGNMRSHMQIHTGEKRYSCSYCNKQFRQSGNLKIHMQIHTGEKNYVCEVCNKRFRQSGNLKSHMQIHQDVKPFVCEICNKCFKQSANLKSHQKIHGNEKPYSCDLCQKAFTHSVYLMYHMRTHTGEKPYACEQCGKKFAQRATLKSHMQTHTGEKPFKCELCDKRFTQKVNWKSHMFVHTGEKPFPCHLCQKRFNQRTVLNRHIQMHSGIKPFTCEFCKKSFTLKGNLKKHIETHNAEMFEQRVSLRLQTMIIKPEFQGHYVDVLD

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01287380;
90% Identity: iTF_01287380;
80% Identity: iTF_01287380;