Basic Information

Insect: Pyrrhosoma nymphula
Gene Symbol: salm
Assembly: GCA_963573305.1
Location: OY754330.1:141985279-142005718[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 10 0.087 73 7.1 0.1 2 21 263 282 262 283 0.93

2 10 5.5e-06 0.0046 20.3 0.9 1 23 884 906 884 906 0.98

3 10 1.1e-05 0.0092 19.4 2.1 1 23 912 934 912 934 0.98

4 10 0.068 58 7.4 3.8 2 23 1352 1373 1351 1373 0.98

5 10 6.6e-08 5.6e-05 26.4 0.6 1 23 1379 1401 1379 1401 0.97

6 10 0.00014 0.12 15.9 3.3 1 23 1411 1433 1411 1433 0.98

7 10 0.0023 1.9 12.1 1.9 2 23 1809 1830 1808 1830 0.97

8 10 2.7e-07 0.00023 24.4 1.4 1 23 1836 1858 1836 1858 0.99

9 10 1.5e-06 0.0013 22.1 4.0 3 23 1953 1973 1951 1973 0.96

10 10 8.7e-08 7.4e-05 26.0 1.0 1 23 1979 2001 1979 2001 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	10	0.087	73	7.1	0.1	2	21	263	282	262	283	0.93
2	10	5.5e-06	0.0046	20.3	0.9	1	23	884	906	884	906	0.98
3	10	1.1e-05	0.0092	19.4	2.1	1	23	912	934	912	934	0.98
4	10	0.068	58	7.4	3.8	2	23	1352	1373	1351	1373	0.98
5	10	6.6e-08	5.6e-05	26.4	0.6	1	23	1379	1401	1379	1401	0.97
6	10	0.00014	0.12	15.9	3.3	1	23	1411	1433	1411	1433	0.98
7	10	0.0023	1.9	12.1	1.9	2	23	1809	1830	1808	1830	0.97
8	10	2.7e-07	0.00023	24.4	1.4	1	23	1836	1858	1836	1858	0.99
9	10	1.5e-06	0.0013	22.1	4.0	3	23	1953	1973	1951	1973	0.96
10	10	8.7e-08	7.4e-05	26.0	1.0	1	23	1979	2001	1979	2001	0.98

Sequence Information

Coding Sequence: ATGGAACACAGTTGCAGCACACAAGTCCCAGAGACCAAAGTGGAAAACCAACCAACCCCTTGTTTTCCTTCACTCCGAGTTcgatcccttccctccccttccagcCGTTTCAAACCCTCCCCGCCGCGACAAAACCATCTTCCTGCCAGCATCTCAACTCACACCATTTCAAGTCGAGACGCACGCGCCGAGGGGTCTAGTTCCCGGACCTCCTGCCCCTCAAATCATCTCGGGAAACCCGTATCTTTCCCTCTACATAtttccttcttctccttccgAAGAGAATCACCCCCTCTCGCCCCCAGAGGAAAAGGGCTTAACAACGTGCCGAGGGATCTCCCCTGCCCCCAAACACCCTTATTCCGCGCGTGCCCCGCCCGCGAGGAACCTCTCCCATCCATCCCTACCGGAGCATTTCCGGCTTTCTGGAATCCAAAGATTTTCGGCGCTCCCGTGCGCGGCGTGGCATGGCGAGCAACAGCCGCCGGATGGCTGCTCGGAGTCTTGACTCGGCAACCTCTCGCGCCCCCCAGGGCGGCAGATGGAACGTGccgaagggggtggggggggagataTTTTTGTGGGAGTTTGGTTGAATTACCTGCAGAGAAGACGCGCCGAGGAGTGCTCGCACGAAGAAAGGCCGCATATGAGTGTTTCTGTTCCGTAAACTACTCTTCAACGCTCCACAGCGCCATCAGACGACAGGAAGAAGTATCGGGCTCGTGCTCCGATGAGGACGTTGCCGGCGGGAGCGGCGTGTCTGCGGCCGGTGGAGACGACCTGACTTGCCGACGGTGCGGCCAGGACTACCCCACCCAAGAGGAGCTGCTCGAGCATCGCCAGCAATGCCGGGAGGCCGCCCCTTCGCCCGCGTCCGCCGACGCCGAAGACGACGACGCTctggagagggtggggagggaggccGCAGATTCCTCGGATGGCGCGAGGGGGGAGAGCGGCGAGGGGGAGACGTTCGACGAGGAGGGCGACCGGGATGATGCCGAGGAAGCGATGGACGCCGAAGAGGACATCCCCAGGCCGATGGACGACAGGGCGGACGACGAAGACGACATGGAGGGCGAGGACGAGGCGATGGGAAAGTCGGTGCGCCGGAGGCTCGAAGACGCGGACAACAACAATAACGAAGATCTCGAAAAGGGCGAAGGGGACGAGGAAGAAAGGGAGGGCGCGACGGGGGAGGGCCAGGGAGACGACGGCCAAGCGGTCCACACCCAGGTACTCAACAGGAGAAAAGAACGAAGCAGAAAGCCGAGGAAAGCGGTATCTTTGAAAGACGTCGTCGATCCTGTACACGCCGGACTGGTGCACCCGGCTTTTCCCTTGCAGTTTCCGGCCACCGCCGACAGGGCAGCTCTCCTGGCACCGCTGTTCCAGTTCCAACAGGGAGCCGTGTCTCCCGACTCCTCCTCCGGGAAGTCCGAAGGTGCGCCCTTGAGTTCACCCGCAGCAGCGGCCGCGGCAGCCGCAGCGACGGCAAATCTCAGTCCGGCCATTGCAAGTTTGCTCACGCAGATGGGAATACCTGGACTCTCATTACCGGCCACGAACGTGACATTAGAAGCACTACAGAACACGAAAGTTGCCGTAGCCCAGTTCGCAGCATCTGCCCTGGCGGCTTCCGGAGGCGCGGCTCCTGGAACACCCGGTGCAGCCAATCCGGAAAAGGCAGCCGCTGCGATTCAGGAATTAGCCGTCTTGCAGTCAACACTGTACACACTCCAGCACCAGCAAATGCTGCAACTGCAACTGATCCAACAACTACAGCAGCAGCTGCAGATTACGAGGTGCAATCCCCAAGACAAGGAGAACGGAGACGAgggtgaggatggaggtcgcgaGGATGATAGGGAGGACGGGGCCGAGGGGGGAAGCGGGATGGGAGGAACGGAAGGAGATTCTCCCGGACCGGAAGAGATCGAAGGCGGGAGAAGAAGTCCCACATCCCTCGCCCGCGTGGTCTCTTCGCCGTCCTCCTCGGACGAATCTTCTCCGCCTGCCGCCGCGTCCTCGGCTTCCAAGCGCACCACCCCACCTCCACCACCTCATCCGCCCCCGTCACAAACACAACAGCTCCTCCAGAGGCATTTCGGAAGCGTATCGTCACCATCCACTGCCTCTAAGAGCATGATACAGCATTACTCGCATACTCCCCTCCTCTCGCACCAGATTCCGCACTCCTCTCTCATCCTCGGAAGCCAACGGTTACCAGCGTCCGCACCCACAACATCCGGTCCTTCGTCGGCAAGCGCACCATCATCCTCCTTAGCAACGATGGCGCACACTCCATTGCCAGCTACGGGAGCCCCGCTGCCTCCGAGACCGCCAATCACGTCCGTGGGCCTTTCCTTGGCTCAAGGAGGGGTTAGTTCGAGTCAGACTGCGCAACAGACCGCAGCCTCTATTCTTGCATCAACTATCATTACCAATTCCGACCCACCACCGCCACCCACGGAGCCCAACACGTTGGAAATGCTCCAAAGGAGAGCGGAAGAAGTCTTGGACAACGCCAGCCAGGGTCTCCTGGGTCACGGGCTGGCGGACGAGCTCGCCTCCGCATCCGGACGCAAGGGTGGGAGCGGAAAGCCTTCGGGCGGCCTGTCTCCGAGAAGCGAACCCTTCTTTAAGCACCGATGTCGTTATTGCGGCAAGGTATTTGGAAGCGATTCCGCCCTCCAGATACACATCCGCTCCCACACGGGCGAGCGCCCCTTCAAGTGCAATGTTTGCGGCAGTCGATTCACCACCAAGGGAAACCTCAAGGTTCACTTCCAACGACACACCGCAAAGTTCCCCCACATCAAGATGAATCCGAATCCTGTGCCGGAGCACTTGGATAAGTTCCACCCTCCCCTCTTGGCTCAGCTGGGaccaccacctccccctcctcccccgccacaCTCGATGCACCCGCACCACATCAACCCGTTCACTTCCGCCACCTTCCAGCCCCCACCAAATCagcccccgccccctcctccacctccaccgcCCACGACCTCGTCGGCACTGTTCCGGCACGACCTGGTGCAGCAGCACCTGCAAGCCACCAAGCAGCCAAGCTCTCACCCGCACATGCCTCCCCATCCCTCGCTCCCTCACCACCTCGCGATGTTCGGAGGACCGCACATGCCTCCGCCCCCACCAAACGTCGCGGCGCTTCCCCCTCAGGCGCCGCCACCACCACCCCCCCAGACCCATCAGGACACCCCGGAGAACCTGAGCAAGCCTCAGCAACAGGCtactccaccaccacctcctcctcactCGACTGCGAGTGGAATACAACCGGGTGCGTGCAAGAAAGAACCAACCGATGAATTGGAGATCGCCAACGAAGGGGATTCAGTGGCGAGGGATTCTGTAACTAGAGAGGAAGATGAGGGAGACGATCAAGATGAGCGGATTGGTAGGAACGTCGGTGATGACGGTGCGCGTTCAAGTCCAAAAACTGAACCCGATTCGGAGGCGGAGAGATATCCTTCCCCTGGTGGAGTGTACGGTGGTGATCTCAGCTTAGACAGTAAATACAGTGCGGAAGATATGGGTGATGATGACGATGGAGTCATGCCCATGGATGGAGATGATGATGACTGCCAAGATGAGAGAGGCAGCCGAGAGGGCGGACACAGCGGCAGTCGCAGCACACCCGGCGTCGATGGAGACGGCGACAGCATGCAGGATCAGCCGGAAAATTTGTCCAAGTCGGTCGGCGAACGAGCAAGTTCCGGTGACTGCGTCCAGCGCCTACCCGCTTCCTTACCTTTCCCTCTGGGTTGTTCCAGCAGCCTCGGAGGGCGAGCCGCTTCCACATCTCCGACTCTCATGCACCACTCGGGAGGAGTCGGAATGCCACTCCTGATGGGCGACGTCGATCCAGCGAAGGACCCCGCGATATACACGTCCTTACTTCCTCGCCCTGGAAGCAACGACAATTCGTGGGAGAGTCTCATAGAAGTTACCAAGACATCGGAAACATCCAAACTACAGCAACTAGTGGACAACATTGAACACAAGCTGACAGATCCAAATCAGTGTGTCATCTGCCACAGGGTGCTGTCATGCAAAAGCGCGTTGCAGATGCACTACCGAACACATACTGGCGAGCGACCGTTCCGCTGCAAAATATGCGGGCGAGCCTTCACGACGAAAGGCAACCTCAAGACACACATGGGCGTCCACCGAGCCAAACCCCCGACCCGCTTACTGCACCAGTGCCCCGTGTGCCATCGCAGATTCACGAACTCACTCGTGCTCCAGCAGCACATTCGCCTGCACACGGGCGAGCCAACAGATCTCACTCCGGACCAGATTAGGGCAGCAGAAGTCAAAGATTTCTCCCCGTCTCCCATTCCACCCCCTCCGCCCAGCATCGGATCTCACCCGGCGGCGGCCGTGGCCTTCGCCTCCTCATTCCTCCGACAGACGCCGCCCCCTCCTCACCTGCAGCACCATCCCTTCGCCGCACTGTCCCCTCTTCACCCTCCGCCACCTCCTCCCCTTTCCCTGCACCCTCCACCCACACCCCCTTCGAGGACATCTCCCAAGCACGATGCGGGATCCGAAGACATGGAGGACAAGGAGGAGGCCCAGAGGATGCAAGAGGCCGCCGAGGACGACGAGGATCTGGGGGACGGCTCCCAGATGGCGGCAGATGAGGAAGCAGGAGACGAAGATGAGAGCAGGGCCAGTGAGGAGGGAATCGCCGAGAGAGAAGtcaaggaagaggagaggaagcatgCGTGGCACGAAGACGTCGAGGAAGCCCGTCCCCAATCCGCCGCCGCGGCCACGACCCCTCTGCAGTTGCAGCAACCTTCCTTCATGAGGCAGGGAACTCCCTTGGCTCTCCACTCGCAGCACACCATCCTCCCGGCGTCCCTCCCGCCGGTTTCCAACGTCACGTCCTTCTCCACCTCCCTGGCCGCTCTGGAGAACCAAGTGCGAACCATCACGACGATGGCCGCCGCCGCAGCAGCCGCGGCCGCCGCCAACCACCACGACACGACCGCGGGGGGCGCGAGGGGGGATCGGTCTCCAGGTTCCATAGGGAGTCCGAGACGGGCCGGGAGTCCATCGCATGGTCCGTCGCGAGTGAGCCCAGCGGTATCGGAATCCAATTCGCTCGGTGCGCTGGACCTAACGCCTCGAGGTAGCGGCGGTGGTGGCGGCAACCTAGGCGGAGGGCCTATCGGAGGTGGCGCAGGCAACGTCGGCCCACTGAGTGGGCTCGGTGGAGGTCCTCACCATCCGCCGGTTTTCTCGGCCTTCGGCCTTATGCCACCATCCTCTGGGTCTCCTCTCATGACGTCTGCTCTCTCTTCATTGACATCTTCGGTGCTCACGTCCACTGCTTTCAGTCCGATGGCCTTATCCGTTGGTCATGGAGGACGGGGGAACACAACATGTAATATATGCTACAAGACTTTCGCATGCAACTCAGCCCTGGAAATCCACTACAGAAGCCACACTAAGGAGCGACCTTTCAAATGCACCATATGTGACAGAGGCTTCTCGACAAAGggAAACATGAAGCAGCACATGCTAACCCATAAAATAAGAGACATGCCTCCTCACCTGTTTGAAGCCAGCAGCCGTAGCCCAAGCACAGGGTCCCAAGGACTACACTTGAGCGAAGATGCAAATCACCATGGTGGCAGTGGGAGCAATGGTAGTCTCTCTTCCAGTATTCAACCAGATGACGTTGGATCCATTGGTGATGTTAAATCAAACCCTGGGCCAGTAGCTTTAGATGGTTCAAGCATCAAGAGGCCACCGGAAAGTGAAGGGACTCTACCAGTTCCTAAAAGACCACCAGGCTTGCCAAAGCACTTGTGCCACGTTTGCAATAAGAACTTCTCGTCATCATCAGCACTGCAGATTCACATGCGAACCCACACTGGGGACAAGCCGTTCAAGTGCACTATCTGTCAAAAAGCTTTCACCACAAAGGGGAACTTGAAGGTGCACATGGGCACACACATGTGGAGCAACGGGGCATCTCGGAGGGGCAGGAGAATGTCCTTGGATCTCCCTCCCATTCCCATGACACCGAAGGACTCGGAATTTCTCCAGAGGAGACCTGATCTATTCTACCCATATCTCCCGGCTCCGTTCCTCAATGGAATGCAGCAAAAGttGAATGAGATCTctgtaatacagagtgccaacagCAACCACATGCCTGTCCCTCCTCAAGTTCCCCCGACAAGTGGAGCCAATGCATCTGCGGCTGCAGCTGCTGCTGCTGTGAGCAAATATGCAGCGCTGGCAGCTTTCGCTGGATATGACAAGCCCCTTCCTCCTCATCACCCACCACCACCGCCACCCCACCACCACCAGTCAGGCGAACCAACACACTCTCCCCTCTTTCCACCCATTTTGAGGCAGCCAATACCACCCCTCCCGCAAGTACTCAAAGCATCATCGCCTCCGCCACCATCCTTAAATCCTCCCCCATCCCCGTCCCTGCAGCAATCCCAACCTCACCAGCACGTGCTTGGTGGGAGTTCTAACGCCCAGAGAAACCCATCCCCAAGCAGTCCTCCACCCATGTGGGACCTGCATTTTGACAGAGAGCAAAGGTCATCGGGGCCAGGAGATAGTGAAAGACTTATGGACAGCTCACCTGCCCCCTCTCCTTCAACCCCTTCCCCCATGGTTACCTCTCGGGAAGAGAGCCTAGTTGTGTGA
Protein Sequence: MEHSCSTQVPETKVENQPTPCFPSLRVRSLPSPSSRFKPSPPRQNHLPASISTHTISSRDARAEGSSSRTSCPSNHLGKPVSFPLHISFFSFRRESPPLAPRGKGLNNVPRDLPCPQTPLFRACPAREEPLPSIPTGAFPAFWNPKIFGAPVRGVAWRATAAGWLLGVLTRQPLAPPRAADGTCRRGWGGRYFCGSLVELPAEKTRRGVLARRKAAYECFCSVNYSSTLHSAIRRQEEVSGSCSDEDVAGGSGVSAAGGDDLTCRRCGQDYPTQEELLEHRQQCREAAPSPASADAEDDDALERVGREAADSSDGARGESGEGETFDEEGDRDDAEEAMDAEEDIPRPMDDRADDEDDMEGEDEAMGKSVRRRLEDADNNNNEDLEKGEGDEEEREGATGEGQGDDGQAVHTQVLNRRKERSRKPRKAVSLKDVVDPVHAGLVHPAFPLQFPATADRAALLAPLFQFQQGAVSPDSSSGKSEGAPLSSPAAAAAAAAATANLSPAIASLLTQMGIPGLSLPATNVTLEALQNTKVAVAQFAASALAASGGAAPGTPGAANPEKAAAAIQELAVLQSTLYTLQHQQMLQLQLIQQLQQQLQITRCNPQDKENGDEGEDGGREDDREDGAEGGSGMGGTEGDSPGPEEIEGGRRSPTSLARVVSSPSSSDESSPPAAASSASKRTTPPPPPHPPPSQTQQLLQRHFGSVSSPSTASKSMIQHYSHTPLLSHQIPHSSLILGSQRLPASAPTTSGPSSASAPSSSLATMAHTPLPATGAPLPPRPPITSVGLSLAQGGVSSSQTAQQTAASILASTIITNSDPPPPPTEPNTLEMLQRRAEEVLDNASQGLLGHGLADELASASGRKGGSGKPSGGLSPRSEPFFKHRCRYCGKVFGSDSALQIHIRSHTGERPFKCNVCGSRFTTKGNLKVHFQRHTAKFPHIKMNPNPVPEHLDKFHPPLLAQLGPPPPPPPPPHSMHPHHINPFTSATFQPPPNQPPPPPPPPPPTTSSALFRHDLVQQHLQATKQPSSHPHMPPHPSLPHHLAMFGGPHMPPPPPNVAALPPQAPPPPPPQTHQDTPENLSKPQQQATPPPPPPHSTASGIQPGACKKEPTDELEIANEGDSVARDSVTREEDEGDDQDERIGRNVGDDGARSSPKTEPDSEAERYPSPGGVYGGDLSLDSKYSAEDMGDDDDGVMPMDGDDDDCQDERGSREGGHSGSRSTPGVDGDGDSMQDQPENLSKSVGERASSGDCVQRLPASLPFPLGCSSSLGGRAASTSPTLMHHSGGVGMPLLMGDVDPAKDPAIYTSLLPRPGSNDNSWESLIEVTKTSETSKLQQLVDNIEHKLTDPNQCVICHRVLSCKSALQMHYRTHTGERPFRCKICGRAFTTKGNLKTHMGVHRAKPPTRLLHQCPVCHRRFTNSLVLQQHIRLHTGEPTDLTPDQIRAAEVKDFSPSPIPPPPPSIGSHPAAAVAFASSFLRQTPPPPHLQHHPFAALSPLHPPPPPPLSLHPPPTPPSRTSPKHDAGSEDMEDKEEAQRMQEAAEDDEDLGDGSQMAADEEAGDEDESRASEEGIAEREVKEEERKHAWHEDVEEARPQSAAAATTPLQLQQPSFMRQGTPLALHSQHTILPASLPPVSNVTSFSTSLAALENQVRTITTMAAAAAAAAAANHHDTTAGGARGDRSPGSIGSPRRAGSPSHGPSRVSPAVSESNSLGALDLTPRGSGGGGGNLGGGPIGGGAGNVGPLSGLGGGPHHPPVFSAFGLMPPSSGSPLMTSALSSLTSSVLTSTAFSPMALSVGHGGRGNTTCNICYKTFACNSALEIHYRSHTKERPFKCTICDRGFSTKGNMKQHMLTHKIRDMPPHLFEASSRSPSTGSQGLHLSEDANHHGGSGSNGSLSSSIQPDDVGSIGDVKSNPGPVALDGSSIKRPPESEGTLPVPKRPPGLPKHLCHVCNKNFSSSSALQIHMRTHTGDKPFKCTICQKAFTTKGNLKVHMGTHMWSNGASRRGRRMSLDLPPIPMTPKDSEFLQRRPDLFYPYLPAPFLNGMQQKLNEISVIQSANSNHMPVPPQVPPTSGANASAAAAAAAVSKYAALAAFAGYDKPLPPHHPPPPPPHHHQSGEPTHSPLFPPILRQPIPPLPQVLKASSPPPPSLNPPPSPSLQQSQPHQHVLGGSSNAQRNPSPSSPPPMWDLHFDREQRSSGPGDSERLMDSSPAPSPSTPSPMVTSREESLVV

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01131719;
90% Identity: -
80% Identity: -