Pnym045124.1
Basic Information
- Insect
- Pyrrhosoma nymphula
- Gene Symbol
- bab1
- Assembly
- GCA_963573305.1
- Location
- OY754329.1:144761230-144767960[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 2.4e-15 5.6e-12 48.2 0.0 1 43 28 71 28 73 0.95 2 2 7 1.6e+04 -1.3 1.3 6 15 165 174 163 178 0.87
Sequence Information
- Coding Sequence
- ATGTGGCAGAAGTGCTGGAATACAAACCAGAGTCTTGTGCACAACCTTCGGTTCCGTGAGCGTGGACCACTGAAATCATGGAGACCCGAGACAATGGCTGAAGCCATTTTCTCTGTGCTGAAGGAGGGCCTATCTCTTTCCCAGTCAGCCCGAAAGTATGATATTCCATACCCAACATTTGTGCTATACGCCAATCGTGTGCACAATATGCTTGGCCCATCAATTGATGGAGGATCTGATCTTCGCCCTAAGGGAAGAGGGCGGCCCCAGCGCATTCTTCTTGGAAACTGGCCTGATGATCATATTCGTGGCGTCATTAGAGCAGTGGTGTTCAGAGACACAACTCATGTCAAGGATGAAACTGCACATCTTTCCTATCCTCCTCGCATTCAGGAAcctattcctcctccctctccacagAACTACCCGCCTCCTCCTCAGAATGTACCTTCTTCCAACGGACCAGAGCCAGGCACGCTCTCTGTGGCGGCCGCCGCTGCTGTAGCCGCAGTGGCCCAGGGTCTACGGCAGCAGCTGTGTGCATCTGCAATGGGCCCCCAggccctcccccctcctcccccacctccagtTGCACCGCAAGCATCCCCACCCCCCCAGCAACAGCAACAACCGGATCCTACTGCGGGCATGGCGGCACTCGCCAACAGCCTAGGCAGTCTTGGCAGTGGCCTTGGAGGTCTCGTCGGGAATAGTATTGGAGGCATAGGAGGAATAGGAGTGAGTGGGATGACGTACAAACCAGGAGCAACTTATGCAACACCGCGTCCAGAGAATCTCTTCCAGGAGGATATCGATGAGATTGTCAAGAGCCCCCTACAGCAGCATGGAAGTGGCAGCAGTGGGGTAGGTGTCGACGATAGGGTCATGTCCAGGGAGCCTCCCCCTGAGTTACAGCCAGTTCAAGTAAAGATGGAGCAGTTGGCTGCCGAGGGCCATAACGAGTGA
- Protein Sequence
- MWQKCWNTNQSLVHNLRFRERGPLKSWRPETMAEAIFSVLKEGLSLSQSARKYDIPYPTFVLYANRVHNMLGPSIDGGSDLRPKGRGRPQRILLGNWPDDHIRGVIRAVVFRDTTHVKDETAHLSYPPRIQEPIPPPSPQNYPPPPQNVPSSNGPEPGTLSVAAAAAVAAVAQGLRQQLCASAMGPQALPPPPPPPVAPQASPPPQQQQQPDPTAGMAALANSLGSLGSGLGGLVGNSIGGIGGIGVSGMTYKPGATYATPRPENLFQEDIDEIVKSPLQQHGSGSSGVGVDDRVMSREPPPELQPVQVKMEQLAAEGHNE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01402075;
- 90% Identity
- iTF_00261251;
- 80% Identity
- -