Pumb027522.1
Basic Information
- Insect
- Pyrrhia umbra
- Gene Symbol
- -
- Assembly
- GCA_963891755.1
- Location
- OY982945.1:6517797-6522592[-]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 9.7e-06 0.32 12.0 0.2 21 50 192 221 181 223 0.84 2 4 0.00042 14 6.8 0.2 23 49 222 249 218 252 0.83 3 4 0.0069 2.3e+02 2.9 0.0 21 45 245 269 237 276 0.78 4 4 1.8e-05 0.58 11.2 0.1 21 43 273 295 260 302 0.88
Sequence Information
- Coding Sequence
- atggCTGAATTATGGAATACGAGTGGTTTATGTCGGTGCTGCCATGCTGAAGGCAATATCAAGAGCCTGAATGTGTATTCGAACGTAGGAATCGAAGATGATTTTCATGTTTTGTTGAGGAATACTTTCGATATCGTAcTGAATCCTCTCCCTAATGATGTGGGCACCTACTCCGTGTGCAGTGTATGTGAGCCGAGACTGAGAGATGCAGCGCAGTTCAAGAAACAAGTGTTATTATGTGAAGATAGGTTTAAGCAGTACCTTTATAACTGCGGGTTTAAAGATGCAGTGGAAAAAGAGGTTAAAAATGAATTCGGAGATGATGgaTTGAAAGAGGAATCAAGTCACGATGATCAGGATAGACTGGATATCAAATATGATGATGACAGTCTCCAAGAGATGGAGATCTTCATCCAGCCAGTAGAAGATGATGACCAGCCGCTCTCATTGTTACGGAGCTCCCGGCCGAGGGCGCAGCCCCCGGAGAGTATGGAGCCTGACGCTGAGTGGGCTGTGGCACCGGACTTGAGCGGTGATAATGGGTATTTGAAAATTCATATGCGTGTCCATTCTGGGGAGAAACCATTTTCTTGTGAGATATGCAAACGGTGTTTTAGAGAGACTGGGCAGTTGAAGAGGCATATGAGAGTCCATACTGGTATCAAACCTTACACTTGCAAAATTTGCAACAAACAGATAGGTAACCTATCCAAACATATGCGAGTACACTCAGAAGAGAGGCCTTTTAGTTGCAACGTGtgcaataaacaattttctATCAACGGCAATTTGAAGTTGCATATGAGAACCCATACTGGCGAGAAGCCCTTTGCTTGTGATATTTGTAACAGCCAGTTCACTCAGAGCAGTGGTTTGAAACGACATAGGTGCACACATGTTGATAAAAGTGATGGGTTAAGTTCGTAG
- Protein Sequence
- MAELWNTSGLCRCCHAEGNIKSLNVYSNVGIEDDFHVLLRNTFDIVLNPLPNDVGTYSVCSVCEPRLRDAAQFKKQVLLCEDRFKQYLYNCGFKDAVEKEVKNEFGDDGLKEESSHDDQDRLDIKYDDDSLQEMEIFIQPVEDDDQPLSLLRSSRPRAQPPESMEPDAEWAVAPDLSGDNGYLKIHMRVHSGEKPFSCEICKRCFRETGQLKRHMRVHTGIKPYTCKICNKQIGNLSKHMRVHSEERPFSCNVCNKQFSINGNLKLHMRTHTGEKPFACDICNSQFTQSSGLKRHRCTHVDKSDGLSS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01285952;
- 90% Identity
- iTF_01285952;
- 80% Identity
- iTF_01285952;