Pumb000912.1
Basic Information
- Insect
- Pyrrhia umbra
- Gene Symbol
- lolal
- Assembly
- GCA_963891755.1
- Location
- OY982916.1:17156623-17164371[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 4.1e-16 5.4e-13 49.3 0.0 1 42 324 366 324 369 0.94
Sequence Information
- Coding Sequence
- ATGTCTCAGCAATACAGTCTACGATGGAACAACCACCAGCCGAACTTTATATCTATGTTCACCACGTTATTGAACACCCAGACGCTGGTTGACGTGACCTTGGCCGCTGATGGGAAACAGTTGCTGGCGCACAAGGTCGTGCTTTCAGCATGCAGCACATATTTTCAATCCTTGTTCGTGGATAACCCGTCGCCACATCCCATCGTCATTTTAAAAGACGTCACATTTGCAGACCTTCGGACTATGGTCGACTTTATGTATTGCGGGGAAGTGAATGTCACAGAGGAACAGTTGCCTAAGGTGCTGGACACcgcaaaacttttaaaaataaaaggattGACCGAGATGCCGGATTCGACCTCCCTGACGAGGTCCCAAGCGAACAACGCGGACTTTCAAAGCCAAGGAGATTCCTTGGACTCCCAGCGACAgtcgcccgcagcttcgccgtCAAATAAACGTAAAAGGCGCAGGAAAAGTTCGACGGGCTCAACTTCTCTCAGCATGCTGGAGAACGAGAACCGCGCTGACGTCAGCGCTCAGACAGGCGGCGGCGTTGAAACTATTACGTTAAGCAGTCTGCCACATCACCGGCGCATTCGGGAGTATCACGAAATAAGAACCATCGACAATGCACAACAGACCACGGAAGCCCCAGAAAACATTAACGTGGACCCAATAGGCATGGAGAACACACCAGCGGCGATCCCACAAGGAGGACAGTGGACTATGATGGAGCACTCTTACCCGCGGTACACGAACGCCTGCATCGGCGCCGGCGGGCTGCAGCAGGATCCCGGCATGTACATGAACAACGTTATCAACCCGCACATAGACGCCGACATCAACTACGGCCAGGGCCTGGGCGTGCCCGGCCCCTCCCCCGGGCCCTCGTGCGTGGAGGTGCAAGCCCCGCAGGAGCCCAACCCACCGGCACCCCCCAAACGACGACGAACCACCAACCCACAGTCCGAAGAAAATTTTCAGAGAGCGCTCGAGGCAGTCCGCTTTGGGGGGATCGGATTTTGTAAGGCAGCACGAATGTTCGGCGTGAACAACCGGACCTTATGGCTGGAGTACAAAAAGAAAGGGTACCCGAACAACCGGCCGAGCATCAAGAGCCGCATCAAGCGCGAGCACACCACGCCGCCGCCCGAGCACAAGGACGAGCAGCAGCAGCCGGAGCAGCAGATGGCGCTGCTGTGCCCGCAGCACCAGGTGCCGCCCGGCTTCATCGACTCCAGCACGCCGCACGGCTTCCCGCTGCAGGGCGTGCCGCACAACTCGCCCATCAACATTCTCGGGGTGAACTTCAACTCGATGCAATAG
- Protein Sequence
- MSQQYSLRWNNHQPNFISMFTTLLNTQTLVDVTLAADGKQLLAHKVVLSACSTYFQSLFVDNPSPHPIVILKDVTFADLRTMVDFMYCGEVNVTEEQLPKVLDTAKLLKIKGLTEMPDSTSLTRSQANNADFQSQGDSLDSQRQSPAASPSNKRKRRRKSSTGSTSLSMLENENRADVSAQTGGGVETITLSSLPHHRRIREYHEIRTIDNAQQTTEAPENINVDPIGMENTPAAIPQGGQWTMMEHSYPRYTNACIGAGGLQQDPGMYMNNVINPHIDADINYGQGLGVPGPSPGPSCVEVQAPQEPNPPAPPKRRRTTNPQSEENFQRALEAVRFGGIGFCKAARMFGVNNRTLWLEYKKKGYPNNRPSIKSRIKREHTTPPPEHKDEQQQPEQQMALLCPQHQVPPGFIDSSTPHGFPLQGVPHNSPINILGVNFNSMQ
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01361512;
- 90% Identity
- iTF_00072209;
- 80% Identity
- iTF_01285686;