Ppec018705.1
Basic Information
- Insect
- Pyrocoelia pectoralis
- Gene Symbol
- PRDM15
- Assembly
- GCA_036250285.1
- Location
- CM070076.1:32488444-32489966[-]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 6 0.12 2e+03 0.4 0.1 27 46 187 206 182 211 0.88 2 6 3e-05 0.49 12.0 0.1 21 45 235 259 220 268 0.76 3 6 1.5 2.5e+04 -3.1 0.0 22 30 292 300 290 306 0.84 4 6 2.5e-05 0.4 12.2 0.3 10 44 307 342 300 346 0.81 5 6 0.01 1.7e+02 3.8 0.1 21 51 347 377 343 380 0.85 6 6 0.004 65 5.1 0.0 11 44 392 426 389 430 0.80
Sequence Information
- Coding Sequence
- ATGTCTTTTGAATCTAATTTTTCCAACATTTGTCGCACGTGTCTTTCAGAAAATATAACAATGAAatctgtttttttaataaaccaaaTCCAGGAAGAAGAAATTTCTTTATCAGATATGTTGATGTCTTTTACATCTGTGCAGATATTAAAAGGCGACGGTCTTCCACATCAACTATGTGAGCAGTGCGCCGAAGAAGTAAatagattatttttatttaggaagATGTGTGAAAGTTCTGATGATACTTTAAAACGTTATGCACAACCTTTATTACCATTAActactaataattttaatattaaagatgaaAAGAATGAAATAATTGTGGAGGCTTCTGAAAATTTTATTGATGACGGTGGTggcagtgatgaaatttggaaaGAAGAAGATGAAAATCAGTGTCAAGACCCTAAACCTGTAGGTAATATACATGACGGTAATTCATCGGAAGatgttcttaaaaaaaaaatatcttgTAAACTTTTTGAAGCATCTTGTTTAGGTTTAGCTGAGTATAGGAGACACATGACAAAATTTCATAAGGAAATATTTCAATGTAGAATATGTAATGAAGAATGTAAATCCGATGTAGCATTAAAGCGTCACTTTGAATCTCATAATGTATCATCTAATGACAAAAATTGctcaataatttataaatctaAATTCCTGAGGAAAAATCCTGGTACGATACAAAAACGAAATCTACCTCGAACATGTGACATATGCAATAAAGTATTCCGTTCCCATGGTAATCTGCAACATCACAAATTAATTCATACTGGAGGAAAACCATATCTTTGTAATGTTTGCGGAAAAGGATTTGCTCAGCTAtcgtatttaaaaattcattcatttataCATACAGGTGAAAAACCGTACAAATGTAAGGTGTGCGAAAAAAGTTTTGCTGCACCTGGAACTCTTTTGATTCATGTACGTGCACACACCGGTGAGAGACCCCATGTTTGTAAAATATGTGGAAAAGATTTTCGACAATCTCGCTATTTATCAGCTCATATAAGAACACATACAGGTGAAAAACCTGTCGAATGTAAAGTGTGTAATAGAAGGTTTAATCAAAGTGGTGCACTTATTATTCATATGCGAATTCATAGTGGAGAGAAACCGTATAATTGTTCTCAATGCGGTCATAGTTTTGCCATTAAGGGTACTCTTAAGAAGCATATTAGAACACATACAGGAGAGCGACCATATATTTGTCGAATTTGTGGGCAAGCATTTGCACAAAGTGGTACACTTGCAACTCACAAAAAAATTCATACACGTATGTAA
- Protein Sequence
- MSFESNFSNICRTCLSENITMKSVFLINQIQEEEISLSDMLMSFTSVQILKGDGLPHQLCEQCAEEVNRLFLFRKMCESSDDTLKRYAQPLLPLTTNNFNIKDEKNEIIVEASENFIDDGGGSDEIWKEEDENQCQDPKPVGNIHDGNSSEDVLKKKISCKLFEASCLGLAEYRRHMTKFHKEIFQCRICNEECKSDVALKRHFESHNVSSNDKNCSIIYKSKFLRKNPGTIQKRNLPRTCDICNKVFRSHGNLQHHKLIHTGGKPYLCNVCGKGFAQLSYLKIHSFIHTGEKPYKCKVCEKSFAAPGTLLIHVRAHTGERPHVCKICGKDFRQSRYLSAHIRTHTGEKPVECKVCNRRFNQSGALIIHMRIHSGEKPYNCSQCGHSFAIKGTLKKHIRTHTGERPYICRICGQAFAQSGTLATHKKIHTRM
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01285009; iTF_01284996; iTF_01285010;
- 90% Identity
- iTF_01285009;
- 80% Identity
- iTF_01285009;