Ppec022784.1
Basic Information
- Insect
- Pyrocoelia pectoralis
- Gene Symbol
- -
- Assembly
- GCA_036250285.1
- Location
- CM070077.1:33392439-33398368[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 15 1e-05 0.0018 20.0 1.2 1 23 142 164 142 164 0.95 2 15 0.0012 0.22 13.4 1.2 3 23 172 192 171 192 0.99 3 15 0.0001 0.018 16.9 0.1 1 23 290 312 290 312 0.98 4 15 0.19 33 6.6 0.1 1 23 318 341 318 341 0.96 5 15 1.9e-06 0.00034 22.3 3.1 1 23 367 389 367 389 0.98 6 15 0.0048 0.85 11.6 0.0 1 23 402 424 402 424 0.94 7 15 0.0048 0.84 11.6 0.1 1 23 430 453 430 453 0.96 8 15 0.055 9.6 8.3 3.7 2 23 461 482 461 482 0.90 9 15 8.8e-05 0.015 17.0 3.7 3 23 490 510 488 510 0.98 10 15 0.0054 0.94 11.4 0.3 2 23 516 537 515 537 0.96 11 15 5.9e-05 0.01 17.6 1.0 1 23 545 567 545 567 0.98 12 15 0.0039 0.68 11.9 0.2 3 23 575 595 573 595 0.97 13 15 0.00012 0.022 16.6 0.3 1 23 601 623 601 624 0.95 14 15 0.35 62 5.7 0.2 1 23 638 660 638 660 0.95 15 15 0.00023 0.04 15.7 0.1 1 20 994 1013 994 1016 0.94
Sequence Information
- Coding Sequence
- ATGGATGAAAGTTACACCTTAGTATGGGAGGATGGCTCGACGGTTATACAAACCGAAGAGGTAATCTGCGGTATCGATAACGATTGTACAATACTAACAGACAACAATGAATTCTCCGAAGTGTGCGAAGAAGTTGTCATTCAAGGCAACCATGACCGCGAAATCGCGGAACCTATTAATAATCAAGGTAACGGTATCATGTACGTAACCGAAGACGAAATGATGGTGATACAACAAACGTCCGACGAATCCTTCGTCGAAGACCAATTATTAGATATAACCAACGAAGAGGTCGTTACAGACACGTGGGGCGAAAATTGTTCAGAAATTATAGTTGGTTCCGAGGAGAACATCGAAGAGCCGAACGACGATATCGAAATACCTCTTCCTACGGATCAAGATCAATATACGGCGGCACGTCCCTATCCTTGCGATTTTTGTAGTCGTCGATTTAGGAAAAAATCTAATCTTATGAATCATATGGTCGCTCATCAAACCGATCGACCGCACGGTTGTAATTTATGCGGCGTTCGTTATATTAGAAAGTGTGATTTGATgaatcatttaaaaattcacgCCTACATTCCCGATACGGATGGTTTAGAAGAGGACGATGTTCAGACTATGGACGATTCCGAtgtggaaaaacaaaaaatgaaaagttatttcaaaaaacgtAAAGGTTACAAGATTAAAAAGGAGGATATAGACGGTTCCAGCTCCCGTTCTTATAATTATATCGATGAAGATGTTAAACTTATGGAAGAAATGGAACATAAACCGGATCCGGATTTTTCCAGCTTTCTACCTCAGGAGAACCATCCGATGTCAGAACCAAGATTTCCTATTACCGATCCACGAAAACCATTCGTGTGTCAGCACTGTGGGGTCGGATTTGCACGTGAGAAAGCTTTAGCCTCTCATGCACGTGTGCACGGCGGTGATAGCCCCTTCGAATGCCGCACTTGTGAAGAAGTGTTTTGGGATATATCACTTATGCGCGAACATGTTCGCATTAAACATGGAGGAATAGAACAGAATTTCGACGACGATGACGACGACGAAGATTATTCAGATGAAGAAACTAAGTATGGCCAGTATTTCTGTCCGACCTGCGGTATGTCATTTCATCGACAAGATAATATGAGGCGCCATCAAAGAATTCATATCAAAGATGAACTGACAAAGGAGGCGGGGTTTGGTCATATCTGTAATGTGTGTGGGGAATCGTTTCCGGAAGCGTTGGAGCTTCTTGCGCATGCGGAAGTGCATGCCAGAGGATGGGAACACAGATGTATGATTTGTGGTGAGGTCTTTGTTAACGATGAAACCGTTGCAGCCCATGTGTTAACTCGCCATGGAAAGAGTTTACCACCTAATACATGTATGATGTGCGGCAGGACATGTAAGGATAGACGTACACTTCTAAAGCACTCTTTTGAGCATTCGCAGGAAAAATTGTTTGGCTGTTCAAAGTGCGATAAAACCTTTCATAATAAAGCTCGTTTAAAGCGTCACATGATCTCGCACAGAAATAAGGTTGTGTCATGTGAAGAGTGTGGTGAAGATTTTCCCGATGGAAGAACTTTAATGAATCATAGACATAGTCATAGTGGTGTGTCTGGTAGACATTTCCCTTGCGTAGAATGTGGGAAAACTTTTGGATCTCGAAGCTCACAACAAATCCATCACAGGATTCATACAGGTGAAAGACCATATGGGTGTAGGTTTTGTTGGAAAGCATTTGCCGATGGAGGAACATTACGTAAGCACGAGAGAATACATACTGGAGAGAAACCTTATGCATGTGCTGTATGTCCTCGTGCTTTCAATCAAAGGGTCGTACTAAGAGAGCATATACGTTCTCATCATTCAGGGCCGGATCCTAATTATAGTCACAGTATGACTCCATTTTCATGTGCTGTTTGTTCGGATCTTTTTGCAACGTCACAAGACTTGATTGTCCATTTAATTCATCATTGTGACCTAAATACTGCAATGAAAAGGCAACCACAGGTGGGTCCAAGGAAATATAAAAGAAGGCGTAAATTGAAACCTCACGAAATTGAAATGATGACCACAAGACCCAACGACGAAGAGGAGGAAGATCATCTAACAGATACAGATAATGATAGTGAATATAAGAGAAAAATTGTGCGTAAACCTAAAAAAACACCACCCAAACCCAATATAGAGCAAAGTTACTCCGATATATATAGTAATTTTACAGCTGCAATAGAAAACATTAATTCAATAGTTAACACAAAACCAAACAAAGCAAaaagaaaactgaaaaatgATCAGCAATCTGTACCTTCAAGACCGAAAATGATTCACACACAAAAAACTCGTGTACCTGTGGAAAGTAATGAAGGTGGAAAGGTTAGGCATAAAACGAAAACTTTAGTTACTCACACCCAGCCTACAGAATTAAAGTCGGCGACTGGCGATAGAATACGACCACGCACAAAGAATGTTAACTATCATCACATGCTTCAATCTGAAAAAATTCCCGTCGCAACATTCGGCGAAGAAGATCCGGAGGAAGCTGTTAACAATTTACTTGCCAGTGAGGAAACATTACAGAACAATTTggaacattttcaaactaacGGAGAATGTGATGTGCCTACGGAAATTGTTAATGAAGAAACCGTCGAAACAAAGAAAGACGATATTGGACCTGTGCctacaaatattattaaagtaACACAATCGCCGGCCGTTAATAAATCGAAGAAAAGTTATAGTTTGAGACCGGGCCGTACAATCATTGGACCGGGTAGTAAACTAGTTCGTATCGTCAAGGGCGGTATGATTGtgtcaaaaagtaaaaaaattaaagaagaaattgaaCCTGATAATATCATACCTGATATATGCATTTCTCCTATTCCCGTAATTAAAGAGGAAATCATTATGGATCCCAGTCCCTTGCATGAGTTGGCCGAACTGTCTGTGCAACATGCTCAAAATATGTTTAAATGCGAAATGTGCAGTGAAGTATTTTCAGATCGCGAACAATTAATCGTGCACGTGCCTATACATATTTGA
- Protein Sequence
- MDESYTLVWEDGSTVIQTEEVICGIDNDCTILTDNNEFSEVCEEVVIQGNHDREIAEPINNQGNGIMYVTEDEMMVIQQTSDESFVEDQLLDITNEEVVTDTWGENCSEIIVGSEENIEEPNDDIEIPLPTDQDQYTAARPYPCDFCSRRFRKKSNLMNHMVAHQTDRPHGCNLCGVRYIRKCDLMNHLKIHAYIPDTDGLEEDDVQTMDDSDVEKQKMKSYFKKRKGYKIKKEDIDGSSSRSYNYIDEDVKLMEEMEHKPDPDFSSFLPQENHPMSEPRFPITDPRKPFVCQHCGVGFAREKALASHARVHGGDSPFECRTCEEVFWDISLMREHVRIKHGGIEQNFDDDDDDEDYSDEETKYGQYFCPTCGMSFHRQDNMRRHQRIHIKDELTKEAGFGHICNVCGESFPEALELLAHAEVHARGWEHRCMICGEVFVNDETVAAHVLTRHGKSLPPNTCMMCGRTCKDRRTLLKHSFEHSQEKLFGCSKCDKTFHNKARLKRHMISHRNKVVSCEECGEDFPDGRTLMNHRHSHSGVSGRHFPCVECGKTFGSRSSQQIHHRIHTGERPYGCRFCWKAFADGGTLRKHERIHTGEKPYACAVCPRAFNQRVVLREHIRSHHSGPDPNYSHSMTPFSCAVCSDLFATSQDLIVHLIHHCDLNTAMKRQPQVGPRKYKRRRKLKPHEIEMMTTRPNDEEEEDHLTDTDNDSEYKRKIVRKPKKTPPKPNIEQSYSDIYSNFTAAIENINSIVNTKPNKAKRKLKNDQQSVPSRPKMIHTQKTRVPVESNEGGKVRHKTKTLVTHTQPTELKSATGDRIRPRTKNVNYHHMLQSEKIPVATFGEEDPEEAVNNLLASEETLQNNLEHFQTNGECDVPTEIVNEETVETKKDDIGPVPTNIIKVTQSPAVNKSKKSYSLRPGRTIIGPGSKLVRIVKGGMIVSKSKKIKEEIEPDNIIPDICISPIPVIKEEIIMDPSPLHELAELSVQHAQNMFKCEMCSEVFSDREQLIVHVPIHI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01345905;
- 90% Identity
- -
- 80% Identity
- -