Ppec012223.1
Basic Information
- Insect
- Pyrocoelia pectoralis
- Gene Symbol
- -
- Assembly
- GCA_036250285.1
- Location
- CM070075.1:46042847-46044638[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 1.5e-10 2.3e-08 35.0 0.0 3 42 20 59 18 62 0.93 2 2 0.54 86 4.3 0.0 2 23 337 361 336 368 0.76
Sequence Information
- Coding Sequence
- ATGCCGAATACCTATGTAAGAAAACCTGGAAGTAGGAAATATAGAGATTTTAGGGGCGATGATTTGGAAGGGGCCTTGGCAGCTGTTGCTGATGGACGGTTATCAATACGTGAGGCAAGTGAACAGTACAATGTCCCCAAATCAACAATCCATCGTAAGTTCAGAGGGCAGAATCCTAGAAATCCAGGAGGACAGACAGTGTTTTCACGAAGAGATGAAGAACATATTATAAATGGATTAATAATCTCTGCAAAGTGGCGTTTGCCTTTTACTCCTTTGGACGTTAGAAAACTAGTTGGGCGGTTCCTTGATCGAAAGGAGCTTAAAGTGAAACAGTTCAAAAATAATTTGCCTGGCCGGGTGTGGTTAAATAACTTTCTAAAAAGACACAGTGATAAACTGACCCTACGGTTATCCGAAAATGTCAAAAGGGCTCGTGCTCAAGTTAATGCTGAGACAATCAACAAGTACTTTGATAATATTGAGGAAACTTTAAAAGATGTTAAACCCGACAACATAGTGAACTATGATGAGACGAACGTCTCCGACGATCCCGGCCAGGAAAAAGTTATTGTGGTTAGGGGCACTAAGCACACTGAAAGAGTCATTGATGCTACGAAAAGTAGCCATTCCGTTATGTTTGCCATAACAGGAAGTGGTGTCCTACTGCCAGTATATATTGTTTATAAAGCTAAGCATGTTTATGACAACTGGACGGAAAATGGGCCAAAAGATGCAGTCTACAATTGTACTAAAAGTGGATGGTTTGACAgcgtactttttgaaaattggtttaaCAAAGTTGCCTTTGAATATCTACGAAAACTATCCCAAATGATTGAAAAgtgtgaaaataataatatcagATTTGTTTTACTCCCTCCAAATAGCACACACGTAACACAACCTTTGGATGTTTCATTTTTTCGCCCTTTTAAACGATCCTGGAAAACTACTTTACTAGACTGGAAAAAGAAGCATAGAGGAACACTGCCAAAACAACAATTTCCCGAAGAATTGAATAAAGCTTTGCAGGCAATTAGTAATTTGAAAGAGAATGCCATCTCTGGTTTTAAAGCGTGTGGATTGATTCCCATAAACAGAAATGAAGTTTTGAAAAGACTCCCAAAAGTTGACATAGATCTAGATAGGACTGGAGAAGATTGGCATGCTGTTTTTGAAGAAACCATAAAGAACAACCAAGACGCCCGTATACAGCCTTTGCGACAAgttagaaagaagaaaaattcagCACCCCCGGGGGCACCTGTAACCAAAGATAGGCTTGTTGAAGGTGTGCCtgaaaaagaaaaaccaaaCCCTGGGGAACCTGAAGATGAAAATTATCATGTCACCGCGGAAGATGATAACCATGAAGACCATGATGCAAGAAATGCTGAGGTACAATCAAATGACCTTGATCAAATAGAAAAGGAGATTCAAGATGCAAGCAATACAAGGCATAATGGACAAGAAAAAACATTGGAAGTAggagattttattttatgtgacTTTCTCTATAACAAaggaacaaaaaaagaaataaataaacagttTGTTTGTCAAATAAGCAGCATTATTCCAGGCCAAGGCTTTGAAGTTAAGTGTATGAGATTGAACTCACAGTTGAATTGCTACGTTTTTCCTGATGTTGAAGATGTAGCCACGATTTCTGGATCTCAAGTTAATAAGAAACTACCAAAACCTTTGAATAAAAGGGGGAAATTTACTTTTGAGCTGTTGAGCTAA
- Protein Sequence
- MPNTYVRKPGSRKYRDFRGDDLEGALAAVADGRLSIREASEQYNVPKSTIHRKFRGQNPRNPGGQTVFSRRDEEHIINGLIISAKWRLPFTPLDVRKLVGRFLDRKELKVKQFKNNLPGRVWLNNFLKRHSDKLTLRLSENVKRARAQVNAETINKYFDNIEETLKDVKPDNIVNYDETNVSDDPGQEKVIVVRGTKHTERVIDATKSSHSVMFAITGSGVLLPVYIVYKAKHVYDNWTENGPKDAVYNCTKSGWFDSVLFENWFNKVAFEYLRKLSQMIEKCENNNIRFVLLPPNSTHVTQPLDVSFFRPFKRSWKTTLLDWKKKHRGTLPKQQFPEELNKALQAISNLKENAISGFKACGLIPINRNEVLKRLPKVDIDLDRTGEDWHAVFEETIKNNQDARIQPLRQVRKKKNSAPPGAPVTKDRLVEGVPEKEKPNPGEPEDENYHVTAEDDNHEDHDARNAEVQSNDLDQIEKEIQDASNTRHNGQEKTLEVGDFILCDFLYNKGTKKEINKQFVCQISSIIPGQGFEVKCMRLNSQLNCYVFPDVEDVATISGSQVNKKLPKPLNKRGKFTFELLS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01284210;
- 90% Identity
- iTF_01284206; iTF_01284207; iTF_01284208; iTF_01284224; iTF_01284210;
- 80% Identity
- -