Ppec009253.1
Basic Information
- Insect
- Pyrocoelia pectoralis
- Gene Symbol
- -
- Assembly
- GCA_036250285.1
- Location
- CM070075.1:34349384-34351176[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 1.3e-10 2.1e-08 35.1 0.0 3 42 20 59 18 62 0.93 2 2 0.5 79 4.5 0.0 2 23 295 319 294 326 0.76
Sequence Information
- Coding Sequence
- ATGCCGAATACCTATGTAAGAAAACCTGGAAGTAGGAAATATAGAGATTTTAGGGGCGATGATTTGGAAGGGGCCTTGGCAGCTGTTGCTGATGGACGGTTATCAATACGTGAGGCAAGTGAACAGTACAATGTCCCCAAATCAACAATCCATCGTAAGTTCAGAGGGCAGAATCCTAGAAATCCAGGAGGACAGACAGTGTTTTCACGAAGAGATGAAGAACATATTATAAATGGATTAATAATCTCTGCAAAGTGGCGTTTTCCTTTTACTCCTTTGGACGTTAGAAAACTAGTTGGGCGGTTCCTTGATCGAAAGGAGCTTAAAGTGAAACAGTTCAAAAATAATTTGCCTGGCCGGGTGTGGTTAAATAACTTTCTAAAAAGACACAGTGATAAACTGACCCTACGGTTATCCGAAAATGTCAAAAGGGCTCGTGCTCAAGTTAATGCTGAGACAATCAACAAGTACTTTGATAATATTGAGGAAACTTTAAAAGATGTTAAACCCGACAACATAGTGAACTATGATGAGACGAACGTCTCCGACGATCCCGGCCAGGAAAAAGTTATTGTGGTTAGGGGCACTAAGCACACTGAAAGAGTCATTGATGCTACGAAAAGTAGCCATTCCGTTATGTTTGCCATAACAGGAAGTGGTGTCCTACTGCCAGTATATATTGTTTATAAAGCTAAGCATGTTTATGACAACTGGACGGAAAATGGGCCAAAAGATGCAGTCTACAATTGTAGTAAAAGTGGATGCACACACGTAACACAACCTTTGGATGTTTCATTTTTTCGCCCTTTTAAACGATCCTGGAAAACTACTTTACTAGACTGGAAAAAGAAGCATAGAGGAACACTGCCAAAACAACAATTTCCCGAAGAATTGAATAAAGCTTTGCAGGCAATTAGTAATTTGAAAGAGAATGCCATCTCTGGTTTTAAAGCGTGTGGATTGATTCCCATAAACAGAAATGAAGTTTTGAAAAGACTCCCAAAAGTTGACATAGATCTAGATAGGACTGGAGAAGATTGGCATGCTGTTTTTGAAGAAACCATAAAGAACAACCAAGACGCCCGTATACAGCCTTTGCGACAAgttagaaagaagaaaaattcagCACCCCCGGGGGCACCTGTAACCAAAGATAGGCTTGTTGAAGGTGTGCCtgaaaaagaaaaaccaaaCCCTGGGGAACCTGAAGATGAAAATTATCATGTCACCGCGGAAGATGATAACCATGAAGACCATGATGCAAGAAATGCTGAGGTACAATCAAATGACCTTGATCAAATAGAAAAGGAGATTCAAGATGCAAGCAATACAAGGCATAATGGACAAGAAAAAACATTGGAAGTAggagattttattttatgtgacTTTCTCTATAACAAaggaacaaaaaaagaaataaataaacagttTGTTTGTCAAATAAGCAGCATTATTCCAGGCCAAGGCTTTGAAGTTAAGTGTATGAGATTGAACTCACAGTTGAATTGCTACGTTTTTCCTGATGTTGAAGATGTAGCCACGATTTCTGGATCTCAAGTTAATAAGAAACTACCAAAACCTTTGAATAAAAGGGGGAAATTTACTTTTGAGCTGTTGAGCTAA
- Protein Sequence
- MPNTYVRKPGSRKYRDFRGDDLEGALAAVADGRLSIREASEQYNVPKSTIHRKFRGQNPRNPGGQTVFSRRDEEHIINGLIISAKWRFPFTPLDVRKLVGRFLDRKELKVKQFKNNLPGRVWLNNFLKRHSDKLTLRLSENVKRARAQVNAETINKYFDNIEETLKDVKPDNIVNYDETNVSDDPGQEKVIVVRGTKHTERVIDATKSSHSVMFAITGSGVLLPVYIVYKAKHVYDNWTENGPKDAVYNCSKSGCTHVTQPLDVSFFRPFKRSWKTTLLDWKKKHRGTLPKQQFPEELNKALQAISNLKENAISGFKACGLIPINRNEVLKRLPKVDIDLDRTGEDWHAVFEETIKNNQDARIQPLRQVRKKKNSAPPGAPVTKDRLVEGVPEKEKPNPGEPEDENYHVTAEDDNHEDHDARNAEVQSNDLDQIEKEIQDASNTRHNGQEKTLEVGDFILCDFLYNKGTKKEINKQFVCQISSIIPGQGFEVKCMRLNSQLNCYVFPDVEDVATISGSQVNKKLPKPLNKRGKFTFELLS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01284210;
- 90% Identity
- iTF_01284209;
- 80% Identity
- -