Basic Information

Gene Symbol
nfxl1
Assembly
GCA_905333025.1
Location
HG995154.1:36572612-36575712[-]

Transcription Factor Domain

TF Family
zf-NF-X1
Domain
zf-NF-X1 domain
PFAM
PF01422
TF Group
Zinc-Coordinating Group
Description
This domain is presumed to be a zinc binding domain. The following pattern describes the zinc finger. C-X(1-6)-H-X-C-X3-C(H/C)-X(3-4)-(H/C)-X(1-10)-C Where X can be any amino acid, and numbers in brackets indicate the number of residues. Two position can be either his or cys. This family includes Swiss:P40798, Swiss:Q12986 and Swiss:P53971. The zinc fingers in Swiss:Q12986 bind to DNA [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 20 2 2.2e+04 -5.0 1.9 15 19 165 169 165 169 0.85
2 20 0.13 1.5e+03 -0.3 0.4 4 10 200 206 199 206 0.95
3 20 3e-08 0.00034 20.9 17.0 1 19 214 231 214 231 0.99
4 20 2e-08 0.00022 21.5 15.4 1 18 267 284 267 285 0.97
5 20 1.6 1.8e+04 -3.8 0.8 5 10 309 314 309 314 0.84
6 20 5.2e-09 5.9e-05 23.3 15.5 1 19 320 338 320 338 0.99
7 20 9.8e-06 0.11 12.9 10.9 1 18 373 390 373 391 0.92
8 20 1 1.2e+04 -3.2 0.2 1 4 400 403 400 404 0.87
9 20 0.0056 63 4.0 15.7 1 18 425 442 425 443 0.94
10 20 8.9e-11 9.9e-07 29.0 13.1 1 18 452 469 452 470 0.97
11 20 1.3 1.4e+04 -3.5 1.9 5 10 498 503 498 503 0.90
12 20 0.00051 5.7 7.4 7.4 10 19 519 528 516 528 0.90
13 20 2 2.2e+04 -4.9 9.6 4 12 540 548 538 548 0.86
14 20 2 2.2e+04 -6.9 4.5 14 18 576 580 576 580 0.86
15 20 1.6 1.8e+04 -3.8 0.6 9 12 598 601 598 601 0.77
16 20 0.0029 33 4.9 4.9 1 11 617 627 611 628 0.87
17 20 2 2.2e+04 -4.6 2.9 5 10 644 649 641 649 0.65
18 20 1.8e-05 0.2 12.0 19.7 3 19 658 674 657 674 0.94
19 20 1.5e-05 0.17 12.3 9.2 1 16 717 731 717 737 0.93
20 20 0.92 1e+04 -3.0 0.5 6 10 767 771 766 771 0.90

Sequence Information

Coding Sequence
ATGAATAGCCGCCCGAATTCTGTTAATCCTTGGACCAAAAATCAACAACCGAAGAACAAGGCTAGAAAAGCCGCTCATGTACCAAACTTAACCCCAACTCCTTCGGAGCTCAAATTTAAAGAAGCCCACGTTAAGCTGCAAGCAGCTGTACAAAAACACGTTAAGCAATATGAATCTTCTTCCGAAGAAGAAGATTTGGAGTCTGAGGAAGTGATAGACAAAATTTTGAAGAACTACACAAAAACCGGCGGTAAAAACGAGTTTTTAGGTCGAACTCAAGCTTTCCTTCAAGACTCTTTTCTCTCAGGAGCCGCTACGTGCCTGATTTGTATTTCACGAATTAAACGCGATTCATCGATTTGGAATTGTTCAGAATGTTATTGTTTTTTTCACCTCAACTGCATCCAGCGTTGGTCAAAAGACAGCATTTTCCAACAAAAACAAGCTTTAGTCAACCCTATCCAAGTTGGCAAAATTAAAATGACTTGGGGGTGTCCCAAATGCCGGCACGATTACAACCTCGAGGATATTCCCGACAAATACACTTGTTATTGCAAGAAAACAATAGATCCCAAACCGCAAACTTTCCTAGTTCCCCACTCTTGTGGGGAGATTTGCCGGAAGGATTTGAAGCCAGTTTGCGGCCACAAATGTTTATTGTTGTGTCATCCAGGACCGTGTCCCCCTTGTCCGGTTACCGTCGCCGTCACTTGTTACTGTGGAAGAGAAACACCTAGAACGCAGAGATGCAGCAATAAAGAGTGGTCATGTGGAGAAAAATGCGGAAAGTTGCTGGGATGTGGCAAGCATTCTTGTTCAAATCCTTGCCATTCCGGGAACTGCAACCCTTGCAACAAGAAGAGTTTGCAGAAGTGTTTCTGTAAAAGTCAACAGAAATTGAGGGAATGCGCTACACCCACTTGGAATTGTGATAAGACTTGCAATAAGCCTCTACAGTGTGGTCACCATAAATGCTCAATTGTTTGCCACGAAGGCGATTGCGATCCTTGTCCCCTGACGAAATCAAGGACTTGTCCTTGTGGAAAGAGTAAATTCCAGTTACCTTGCATTGAAGAAACTCCAACTTGTCTCGACACTTGCGAGAAACTCTTAGATTGCCAAATACATACCTGCAACAAGAGGTGTCACAAGGACGCTTGCGGCCCATGTTTAGAAACTGTTAAGAAATCATGCAGATGCGGTTTACATTCCAAAGAAATTCAGTGTTACAAACCTTATTTTTGCGAGGGTAAATGCAAGCGAATGAAAGACTGCAACAAGCATCCCTGCAACAGAAAATGTTGCGATGATAATTGTCCTCCATGCGAAAAACCTTGTGGCCGCACCTTAAATTGCGGTAATCACAAATGTAACTCGGTTTGTCATCGTGGTCCTTGTTATCCCTGCAACCAAACTGAAATTGTTACTTGCCGCTGCGGTCAAACGGAACTGATTGTTCCTTGTGGGAGAAAACAAAAAACAAAACCGCCCAAATGCCAAAAGTCTTGTTCGATTCCTCCTGATTGTCATCATGAACTGCGAGAACCACATCGATGTCACTTTGGTGATTGTCCTCCTTGCAGACAAAAATGTAACAAAAGTAGATCGACCTGTTGCCACTTATGTCCAGTGCCTTGTCATTCCGCTGTTGTTGTTAAAATTGAGGGCCAGAAACCTTCCATGCCATGGGAACAAACCAAACCTCAAATCGCGGTAAAATCGTTGCCTTGTCCTGATTGCATCGTGCCTCAACCGGTCACTTGTTTAGGCGGTCACGAAACCAGCGATTGGCCTTGCCACAAAGCTAAGCCATCAAGTTGCCACAGACCCTGCGGAAGATTATTGGAGTGCAACAATCACTCCTGTACTCTGCCGTGTCACCTGGTTGAAGACGCTCTTAACGAAATTAATGCTGGCAAAAACTGTGAAACTTGCGAGAATAGCTGTTCTAAGCCCCGTCCAGACGGTTGCCAACATCCCTGTCCGAAAGCTTGTCACCCAGGTCCGTGCCCTCCTTGCAAACAAATGTTGCGTATCCGTTGCCATTGCGGTCTGAATCAACCATACGTTGCTTGCAATCAATGGTTGTTGCTTGAAAAAAGGGAAACAATAGGCAGTTGTGGCAATCAATGTCCCAAAAACTACGATTGTGGTCACAGATGTCGTGCTAATTGCCATTCCGGTATTTGTCCTAACTCGGAACTGTGTAGGAAAAAAATTAAAATCACTTGTAAGTGTAAAAGATTGAAGAAGGAGTATTCGTGTGAAACCGTGAGGAAAACTGACGTTAAAGTCGATTGCGATGAAGTTTGCGCACAAAAGAAAGAGGAAGAAAGAAGACAACGTGAAATCGCTCAAGAGGAAAAGAAGAAAGAGGAGGCGATTAAAAATCAGAAGGAGCTGGCAAAATACGAAAAAATATTCGAAGGGAAGAAAAGAAGTAGAGATAGGCGGATTTACGAGGAAGAAGAACAAGTTGGATTTTTACGGAAGTACCAAGTTGGACTCGCTGCTGTTGGGGCTGCTGTACTTTCTCTGATCATTTACTTTTTCTATACAAAATAG
Protein Sequence
MNSRPNSVNPWTKNQQPKNKARKAAHVPNLTPTPSELKFKEAHVKLQAAVQKHVKQYESSSEEEDLESEEVIDKILKNYTKTGGKNEFLGRTQAFLQDSFLSGAATCLICISRIKRDSSIWNCSECYCFFHLNCIQRWSKDSIFQQKQALVNPIQVGKIKMTWGCPKCRHDYNLEDIPDKYTCYCKKTIDPKPQTFLVPHSCGEICRKDLKPVCGHKCLLLCHPGPCPPCPVTVAVTCYCGRETPRTQRCSNKEWSCGEKCGKLLGCGKHSCSNPCHSGNCNPCNKKSLQKCFCKSQQKLRECATPTWNCDKTCNKPLQCGHHKCSIVCHEGDCDPCPLTKSRTCPCGKSKFQLPCIEETPTCLDTCEKLLDCQIHTCNKRCHKDACGPCLETVKKSCRCGLHSKEIQCYKPYFCEGKCKRMKDCNKHPCNRKCCDDNCPPCEKPCGRTLNCGNHKCNSVCHRGPCYPCNQTEIVTCRCGQTELIVPCGRKQKTKPPKCQKSCSIPPDCHHELREPHRCHFGDCPPCRQKCNKSRSTCCHLCPVPCHSAVVVKIEGQKPSMPWEQTKPQIAVKSLPCPDCIVPQPVTCLGGHETSDWPCHKAKPSSCHRPCGRLLECNNHSCTLPCHLVEDALNEINAGKNCETCENSCSKPRPDGCQHPCPKACHPGPCPPCKQMLRIRCHCGLNQPYVACNQWLLLEKRETIGSCGNQCPKNYDCGHRCRANCHSGICPNSELCRKKIKITCKCKRLKKEYSCETVRKTDVKVDCDEVCAQKKEEERRQREIAQEEKKKEEAIKNQKELAKYEKIFEGKKRSRDRRIYEEEEQVGFLRKYQVGLAAVGAAVLSLIIYFFYTK

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_01330267;
90% Identity
-
80% Identity
-