Basic Information

Insect: Pyrochroa serraticornis
Gene Symbol: -
Assembly: GCA_905333025.1
Location: HG995155.1:17461309-17463285[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 16 0.18 13 6.8 1.1 1 23 63 85 63 85 0.91

2 16 0.021 1.5 9.7 1.0 2 23 91 112 91 112 0.97

3 16 3.7e-07 2.6e-05 24.7 2.6 1 23 118 140 118 140 0.99

4 16 1.3e-06 9.1e-05 23.0 2.2 1 23 146 168 146 168 0.97

5 16 0.0034 0.24 12.3 0.5 2 23 177 199 176 200 0.96

6 16 0.00012 0.0086 16.8 3.4 2 23 206 227 205 227 0.97

7 16 0.00011 0.0079 16.9 1.5 1 23 232 255 232 255 0.98

8 16 0.00027 0.019 15.7 0.3 3 23 260 280 259 280 0.96

9 16 2.3e-05 0.0016 19.1 2.1 2 23 287 309 286 309 0.96

10 16 2.2e-06 0.00015 22.3 0.7 1 23 316 338 316 338 0.97

11 16 1.9e-06 0.00013 22.5 2.0 1 23 342 364 342 364 0.97

12 16 3e-06 0.00021 21.9 5.5 1 23 370 392 370 392 0.98

13 16 0.0055 0.38 11.6 2.9 1 23 398 420 398 420 0.98

14 16 9.3e-05 0.0065 17.2 1.5 1 23 426 448 426 448 0.98

15 16 0.0011 0.079 13.8 5.0 1 20 454 473 454 475 0.94

16 16 0.00062 0.043 14.6 0.2 2 23 486 508 485 508 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	16	0.18	13	6.8	1.1	1	23	63	85	63	85	0.91
2	16	0.021	1.5	9.7	1.0	2	23	91	112	91	112	0.97
3	16	3.7e-07	2.6e-05	24.7	2.6	1	23	118	140	118	140	0.99
4	16	1.3e-06	9.1e-05	23.0	2.2	1	23	146	168	146	168	0.97
5	16	0.0034	0.24	12.3	0.5	2	23	177	199	176	200	0.96
6	16	0.00012	0.0086	16.8	3.4	2	23	206	227	205	227	0.97
7	16	0.00011	0.0079	16.9	1.5	1	23	232	255	232	255	0.98
8	16	0.00027	0.019	15.7	0.3	3	23	260	280	259	280	0.96
9	16	2.3e-05	0.0016	19.1	2.1	2	23	287	309	286	309	0.96
10	16	2.2e-06	0.00015	22.3	0.7	1	23	316	338	316	338	0.97
11	16	1.9e-06	0.00013	22.5	2.0	1	23	342	364	342	364	0.97
12	16	3e-06	0.00021	21.9	5.5	1	23	370	392	370	392	0.98
13	16	0.0055	0.38	11.6	2.9	1	23	398	420	398	420	0.98
14	16	9.3e-05	0.0065	17.2	1.5	1	23	426	448	426	448	0.98
15	16	0.0011	0.079	13.8	5.0	1	20	454	473	454	475	0.94
16	16	0.00062	0.043	14.6	0.2	2	23	486	508	485	508	0.97

Sequence Information

Coding Sequence: ATGGACGGTGCGATCTTGCAGGAAGAAATTTACATAAAACATGAAAATATCGAGCCTTCAATCACCTGTAAACAAGAAAACCCCGACTGGACGAGCCCCCTGACTCCAATTTCGTCACCTTTAGTCGAATCTAAAGTAGAAGGCAACAACGAAAACGACACCAAAACTCCTCTCAACAATACCGCTTACAAATGCGATATTTGTAACGAAATTTTTCTGGTTTACTTTGAGTTTCGGGGGCATAGAAAACAACATTTTGTTGAGAAACGTACCTGTAAAATATGTCAACTAATTTGTCAAAGTGTCAGTAAATTGGAGATACATATGAATGGCCATATGGGGTTGAAACCGTTTAAATGTGAGGAATGTTCGAAAAAATTCGTTTCAAAAAACCAACTAAAATTACACATGAGGAGTCATTCCGATGAAAAGCGGCACAGTTGCTCGAAATGTGGTAAAGCTTTTCGACATTTGGGGTCGCTTCGTGTCCACATGATTGTCCATAACGACGTGAAACTTCAAGAAATTCAATGCAAGATCTGCACAGAAACGAGTCCGAGCCTGGAAGCCTATCGCAAGCACCTCATAACCATCCACCACGAAATTCTTGAAATCCAATGCCAGCTATGCAATCGTTTTTTTTCTTCAGACCGCCACCTCCAAACCCACCTCAACACCCACAGCGAACTGAAATACCCTTGCGAGCATTGTTCCCGTATCTACCCTTCTCTCTACCGTCTCAAACGCCACATAAAACGCGCTCACATTCCCAACATTTGCGATGAATGTCCCGAAATTTTCTACGACCGGTCCGCTTTTACCAAACACAAAAAGGAACACACCGACAACAAACCGTCTTCATGTCCTCATTGTAAAAAAAATTTCGAAAAACCCAAGAATCTAAGCGAACACATCCGATTACAACACAAAGAAGACGGCAATCAACATCCATGCGATATTTGCGAAAAAAACTTCATTAACGCTTCACTATTAAGAAATCACGTCAAAACTCATGATAAATCATTTAAATGTCGAGATTGTAATAAAGTTTTTAGTTCGAGATACAATCTCGAAACACATTCAGTCACGCATAGCGGGGAACGCAACCATAAATGTGAAATTTGCAATAAATGTTATTCGACTAAAACTAGTTTAAAAAATCATATAGCGACTCATACTGATGTTAGTAATTTTAAATGTGATTTGTGTTCGAAATTGTTTAAAACTAGCCGTCGATTGTATGTTCACAAATTATCGCATGCTACCGAAGAAAAGTTTGAATGTGAAATTTGTAAAGCTAAATTTCGGGTTAAACAATATTTGAAATATCACATGATTAAACATTCAAGATCGAAACCGTTTGAGTGTAAAGTTTGTAATAAGAAATTCAAACATAAAAAATCGTGGGAAAAGCATTCAAACCACAACCAAGTTGTAACGAAAAACGAAATGGTTCAATGCGGGTTTTGCGGGGAGAAATTTAAAGGAAAAACTCCGCTTTTGGAGCATATTAGGTCCCTGCACGAAGGGGTTGGTTCTAGTCAAATGCGGGACTAG
Protein Sequence: MDGAILQEEIYIKHENIEPSITCKQENPDWTSPLTPISSPLVESKVEGNNENDTKTPLNNTAYKCDICNEIFLVYFEFRGHRKQHFVEKRTCKICQLICQSVSKLEIHMNGHMGLKPFKCEECSKKFVSKNQLKLHMRSHSDEKRHSCSKCGKAFRHLGSLRVHMIVHNDVKLQEIQCKICTETSPSLEAYRKHLITIHHEILEIQCQLCNRFFSSDRHLQTHLNTHSELKYPCEHCSRIYPSLYRLKRHIKRAHIPNICDECPEIFYDRSAFTKHKKEHTDNKPSSCPHCKKNFEKPKNLSEHIRLQHKEDGNQHPCDICEKNFINASLLRNHVKTHDKSFKCRDCNKVFSSRYNLETHSVTHSGERNHKCEICNKCYSTKTSLKNHIATHTDVSNFKCDLCSKLFKTSRRLYVHKLSHATEEKFECEICKAKFRVKQYLKYHMIKHSRSKPFECKVCNKKFKHKKSWEKHSNHNQVVTKNEMVQCGFCGEKFKGKTPLLEHIRSLHEGVGSSQMRD

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01329987;
90% Identity: -
80% Identity: -