Ppur054587.1
Basic Information
- Insect
- Pyrausta purpuralis
- Gene Symbol
- -
- Assembly
- GCA_963924145.1
- Location
- OZ001666.1:4287147-4301016[-]
Transcription Factor Domain
- TF Family
- MBD
- Domain
- MBD domain
- PFAM
- PF01429
- TF Group
- Unclassified Structure
- Description
- The Methyl-CpG binding domain (MBD) binds to DNA that contains one or more symmetrically methylated CpGs [2]. DNA methylation in animals is associated with alterations in chromatin structure and silencing of gene expression. MBD has negligible non-specific affinity for DNA. In vitro foot-printing with MeCP2 showed the MBD can protect a 12 nucleotide region surrounding a methyl CpG pair [2]. MBDs are found in several Methyl-CpG binding proteins and also DNA demethylase [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 7 2e-13 2.3e-09 38.6 0.1 7 52 260 307 255 314 0.88 2 7 4.5e-08 0.00052 21.4 0.1 27 52 315 340 308 347 0.89 3 7 4.3e-08 0.00049 21.5 0.1 27 52 348 373 341 381 0.88 4 7 4.3e-08 0.00049 21.5 0.1 27 52 381 406 374 414 0.88 5 7 6.3e-08 0.00072 21.0 0.1 27 52 414 439 407 448 0.88 6 7 6.9e-08 0.0008 20.9 0.1 27 52 447 472 440 479 0.88 7 7 1e-10 1.1e-06 30.0 0.0 27 70 480 519 473 524 0.89
Sequence Information
- Coding Sequence
- ATGTCGGAAGAAATGGCGTTAGGTGATAACGTTCCGAGCGATGATGCTAAGTTGAACGATGACGAAGTTGCGGCTGCGAGCGCCGTGGAGGGCGATGCGCCTCCTGTGGAGGCTCCGTCTGGCCCAGAGGAGCCCCCGGCGGAGGATGCACCAGCTGAGGATTCGACAAAATGTGCAGTTGATGAAACGGACTCTAAGCACGAACTTGACGTTAAACCAGTTATTGAAGATGATAAAACTGACGTAAAAGATGAAACTTTAGACACCAAAGATGAAATACCTGTTATTAATGATGAGAAATCAGATAACACTAAAGTGGAAGAAGAGTCGGAATCAACTGTGCCAAAAGACAAACTGGCAATGCAAGATGATGCTGCTGGAGATGGCCAAGACATGGAAGTGGATAATGGAACAGATGAGCGTCGAGGGCTGAAGAGAAGAGCATCTGCTGCATTCAGTGATGCCGGGAATGATGATTTTGTTGGCTTTGAAGTAGCAGACACTAGTGACTTGACTGGATACAATCGTGTTCTTGAACGTCTGGAGGCTGAAGTTTCAGCAGCCAGCAAAGACTTTAAGCCTGTGCGAAGTGTGATGGCTTCACCTTTGGCCCCACTTAGGGCTTCAAAGCGGGCTCGGCAGGACACAGATGGATCTAGACCCTCGTCAGCATTATCATCAAGGTCAGATGGAGATGGAGGCATCTCCACAGATGCAGCATCGTCGCCCCTGAACCGCGGCAACCGTCGCGCGACCACCGAGATGTCTTCGCCGCTGCTGCGCGTGCCGCTCGAGCGCGGCTGGAAGCGCGAGCTGGTGCACCGCGCAGCTCTGGACGCGCACTCGCGACGCAACGCGGACATATACTACTACACGCCGCAGGGGAAGAAGCTGCGGTCCACTAGGGAGACCATTGAGTACCGCGCAGCTCTGGACGCGCACTCGCGACGCAACGCGGACATATACTACTACACGCCGCAGGGGAAGAAGCTGCGGTCCACTAGGGAGACCATTGAGTACCGCGCAGCTCTGGACGCGCACTCGCGACGCAACGCGGACATATACTACTACACGCCGCAGGGGAAGAAGCTGCGGTCCACTAGGGAGACCATTGAGTACCGCGCAGCTCTGGACGCGCACTCGCGACGCAATGCGGACATATACTACTACACGCCGCAGGGGAAGAAGCTGCGGTCCACTAGGGAGACCATTGAGTACCGCGCAGCTCTGGACGCGCACTCGCGACGCAACGCGGACATATACTACTACACGCCGCAGGGGAAGAAGCTGCGGTCCACTAGGGAGACCACAGAGTACCGCGCAGCTCTGGACGCGCACTCGCGACGCAACGCGGACATATACTACTACACGCCGCAGGGGAAGAAGCTGCGGTCCACTAGGGAGACCACAGAGTACCGCGCAGCTCTGGACGCGCACTCGCGACGCAACGCGGACATATACTACTACACGCCGCAGGGGAAGAAGCTGCGTTCCACTAGGGAGGTGTCAGAGCATTTATCAGGAACAGGACTGACTTTAGAAAACTTTTCATTCTTCAAAGAGCCATTAGGGGTCGACGACCCTGAGAAGGAAATTATTCGCGACGCGCGCCTGATGTCGGGGCGTCGCGGCGAGTCGCCGGTGGCCGCGGCGGACAAGCGCGCGCCGCGGCCCCGCGCGCCCGCcccggcccccgcccccgcccccgccagCCCCGACCCCGCCGCCGCGTCGCCGCCCGCCAAGATTAGGGTGAAATCAATGGGGTCCCGTCTCAGCAACAGCGGGCCAGCGtccgctcccgctcccgctGCCGCTACTGCCACGCCCACCGCTAAGGCTAAGAAGGCCGCGCCCACAGACAACAACAATAGTGCCGCGTGGAAGAAGCCCAGGCCGCCGTCCGCTGCCGCCGTGACGTCCGTGACGTCCGTGACGGCGACGGCAGCTGTGCCGGCGTCCGTGCCGTCGACGCCTCCGCCGCTGCAGAGCCGGCCCGTGGTACACTCGTCGCCTGAACAGgaGCAATCGCCAAACCGGCAGGTCATCCAGCCCTGTTCTTTGACTTGCGGTCGCGGAGTACCATCTTTAGCGTGCGCGGCCTGTCTCTGCCTGTACCACCCTGCCTGTCTGCAGCACCATGGACCGGTGCCGCAGCCGTTCTACTGCAAGGTAACACTGCATACCATGTCCGGAACTGGACTGAACCTGGAACGAAACGAAACTAGATCCGTTAACATGTGCATAGCTTGTCCTGAACTGGATTGA
- Protein Sequence
- MSEEMALGDNVPSDDAKLNDDEVAAASAVEGDAPPVEAPSGPEEPPAEDAPAEDSTKCAVDETDSKHELDVKPVIEDDKTDVKDETLDTKDEIPVINDEKSDNTKVEEESESTVPKDKLAMQDDAAGDGQDMEVDNGTDERRGLKRRASAAFSDAGNDDFVGFEVADTSDLTGYNRVLERLEAEVSAASKDFKPVRSVMASPLAPLRASKRARQDTDGSRPSSALSSRSDGDGGISTDAASSPLNRGNRRATTEMSSPLLRVPLERGWKRELVHRAALDAHSRRNADIYYYTPQGKKLRSTRETIEYRAALDAHSRRNADIYYYTPQGKKLRSTRETIEYRAALDAHSRRNADIYYYTPQGKKLRSTRETIEYRAALDAHSRRNADIYYYTPQGKKLRSTRETIEYRAALDAHSRRNADIYYYTPQGKKLRSTRETTEYRAALDAHSRRNADIYYYTPQGKKLRSTRETTEYRAALDAHSRRNADIYYYTPQGKKLRSTREVSEHLSGTGLTLENFSFFKEPLGVDDPEKEIIRDARLMSGRRGESPVAAADKRAPRPRAPAPAPAPAPASPDPAAASPPAKIRVKSMGSRLSNSGPASAPAPAAATATPTAKAKKAAPTDNNNSAAWKKPRPPSAAAVTSVTSVTATAAVPASVPSTPPPLQSRPVVHSSPEQEQSPNRQVIQPCSLTCGRGVPSLACAACLCLYHPACLQHHGPVPQPFYCKVTLHTMSGTGLNLERNETRSVNMCIACPELD
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -