Basic Information

Insect: Pyrausta nigrata
Gene Symbol: -
Assembly: GCA_949316185.1
Location: OX438938.1:14848856-14855638[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 20 7.4 6.7e+02 2.0 0.6 1 23 52 75 52 75 0.94

2 20 0.16 14 7.3 2.1 1 23 82 105 82 105 0.97

3 20 0.0024 0.22 13.0 1.1 2 23 212 233 211 233 0.98

4 20 1.5 1.3e+02 4.2 2.1 1 23 239 261 239 262 0.94

5 20 0.041 3.7 9.1 2.7 2 22 500 520 499 520 0.96

6 20 4.1 3.7e+02 2.9 1.0 1 23 618 640 618 640 0.82

7 20 0.25 23 6.7 0.5 2 23 775 796 774 796 0.97

8 20 0.022 2 10.0 0.7 2 23 873 894 872 894 0.96

9 20 0.28 25 6.5 1.5 1 23 902 924 902 924 0.95

10 20 0.14 13 7.4 3.4 1 23 962 984 962 984 0.95

11 20 0.00028 0.026 15.9 4.0 1 23 992 1014 992 1014 0.99

12 20 0.48 43 5.8 1.8 1 23 1089 1111 1089 1111 0.98

13 20 5.1 4.6e+02 2.5 1.3 1 19 1167 1185 1167 1189 0.92

14 20 1.6 1.5e+02 4.1 0.3 1 23 1195 1217 1195 1217 0.95

15 20 0.00073 0.066 14.6 0.0 1 23 1284 1306 1284 1306 0.96

16 20 0.0041 0.37 12.3 0.6 1 23 1312 1334 1312 1334 0.96

17 20 0.0079 0.72 11.4 2.6 1 23 1424 1446 1424 1446 0.97

18 20 0.0002 0.018 16.4 1.4 1 23 1452 1474 1452 1474 0.99

19 20 2.1 1.9e+02 3.7 2.4 1 23 1565 1587 1565 1587 0.96

20 20 0.0035 0.32 12.5 3.7 1 23 1598 1620 1598 1620 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	20	7.4	6.7e+02	2.0	0.6	1	23	52	75	52	75	0.94
2	20	0.16	14	7.3	2.1	1	23	82	105	82	105	0.97
3	20	0.0024	0.22	13.0	1.1	2	23	212	233	211	233	0.98
4	20	1.5	1.3e+02	4.2	2.1	1	23	239	261	239	262	0.94
5	20	0.041	3.7	9.1	2.7	2	22	500	520	499	520	0.96
6	20	4.1	3.7e+02	2.9	1.0	1	23	618	640	618	640	0.82
7	20	0.25	23	6.7	0.5	2	23	775	796	774	796	0.97
8	20	0.022	2	10.0	0.7	2	23	873	894	872	894	0.96
9	20	0.28	25	6.5	1.5	1	23	902	924	902	924	0.95
10	20	0.14	13	7.4	3.4	1	23	962	984	962	984	0.95
11	20	0.00028	0.026	15.9	4.0	1	23	992	1014	992	1014	0.99
12	20	0.48	43	5.8	1.8	1	23	1089	1111	1089	1111	0.98
13	20	5.1	4.6e+02	2.5	1.3	1	19	1167	1185	1167	1189	0.92
14	20	1.6	1.5e+02	4.1	0.3	1	23	1195	1217	1195	1217	0.95
15	20	0.00073	0.066	14.6	0.0	1	23	1284	1306	1284	1306	0.96
16	20	0.0041	0.37	12.3	0.6	1	23	1312	1334	1312	1334	0.96
17	20	0.0079	0.72	11.4	2.6	1	23	1424	1446	1424	1446	0.97
18	20	0.0002	0.018	16.4	1.4	1	23	1452	1474	1452	1474	0.99
19	20	2.1	1.9e+02	3.7	2.4	1	23	1565	1587	1565	1587	0.96
20	20	0.0035	0.32	12.5	3.7	1	23	1598	1620	1598	1620	0.98

Sequence Information

Coding Sequence: ATGCTACGGCAGATGTCCTCGCCGTCGAACGCACAAGTCGGCGAGGTCGGCTCTCTCGTGCGACCCTTTGAACGGCAGTGCGGCGACGCGTCCTCTGAGGCCTCCTCCGACGCCGCCGACGAAGACTTACCACAGTGCAAGATACGAAGGAATTACAATTGCGCCAAGTGCACTTTCTATACGCAGAACCCGCGCGCTTTTCTCGTGCACACACGAGACGTACATTTCGAAAGATTCAAAATATACGACTGTCCTAGTTGCGTGTACGCTTCGAGGCATCATCAGAAACTCGTGAGACACATAAAAATGGTACACGGAGCAGCCGCTACGACGACCTTCAAAATGGACGTCGAACTACCCACCGCAACGGAAACCACAGAACCAGTCGAGCGAATAGAGGACTTGCTCGAGGAAGTCGAGGAATGCGACGACATTGAAGTCGACGTCGACGACTGCCCAGAGGGGCCGTTCGAGCGCTTCGTCGAATACGATGCAGACAAATCGACAACCGCAGAAGGTCGCGCTTTACTGAAGAGTGATAACAAATTCTTTTCTTGCTCCAAATGCAGCTACTCGACCCACATAAAAGCGCGTTTCAAGAAGCACGTCAAGTACCATTGGATGCCGATGAACAAGTGTACCATATGCGATTTTCGCTCGCCTTACAAATGGAATCTAGACCGGCACATGAAGAATCACGGTGGGAGCGGAAGCTTCAAGTGCTCCATGTGCAACTTCACGGCGGAAATCAAGCAAAGTCTGACGTCGCACGAACTGAATCATCACGAGCTGACGGCGGGCCAATCGGTTGCGAGTCGCCGCCGCAATCGGGTGGGCGCCAGCGACGTGATGAACGCGCTCGTCCTCAAGGAGGAGGAAGGGAGCGGAGACTCGCAGTCCGCGTGCTCGGCATCGgaAATGGGTTTACAGAGTGCAGATAAGGAAATGATTAGCTGTAACAGTGATTCCAATGACGCCACGGCGGCAGATGGAAGCAGAAAGGATGGACAAACACAAGAAGCTCACGGTCAACAGTCTCCGAACTCCACAACAGAAGACtccaaatcacaaaaaaataataggaAAATACCAAGACCATTACCACAACTCATTCCATTACACAATTCAACACCTACTAATACTAAAACATTTGGAGAGCCACCAGCTAAGAAGTTTAAAGAATCTACAAACACAGAACCCACAGACCcaaataaagcaaataaattCGAAAATTTGCCAGTTGATATAACTTTAATTCCGGTTAGCAACATTCCTTCGAATACAAAAGAAAATGTAGGTCGTAAGAAAAATAATTCGTTTTTCGACAAACTAAAAGAAAGATTGTTAACTGAGACAGGCGAAGAAGGATCTCTTATTTGTAAAAACTGTGGTTTTGAAAGCAAATGCCTATCTGAACATTCCGTACACGAGAAAAATTGCACTTCACAATTAAACAGAACTGCGACTAACACGTTACTTCCCAGTCTAAGTTCAACACGCTGCCAAAATTGTCGACAAAGATGTAAATCAAGTGCAGATCTCTTCATACACATGAAAACCTGTAAGAAGATGGAAGAAAAAATGGAAGATGACGCTTCTGTTGAAATCAAAAGTCAAGACAGTAATGATGGAGTGATACAGGAAAGAGAGACAGAACCAcatccaatggaaaatgtcgtGTTCGTTTGGAATAACATTCATCAGGATACGAATAAATTTGACACACCGCtagatataaatataaatgatgATTCAACGCTCCCAGAAATGTGTAGAAGCTATGATTCCGAAATCGCTGAAGATAACGAAGGTATGAATTTGTCTCCAAGCCAAGCCATGggtaaaaaagtgtttaaatgCCCGCACTGTCCATTTTGGGCTTCTACTGCATCAAGATTTCACGTTCACATCGTTGggcacttaaataaaaaaccgtttAAGTGTTCTTTATGTAAATATAAGTCGAACTGGCGTTGGGATATTACTAAACACATAAAACTTAAGTCCGCTAGAGATCCCGAACATAACGATGCCAAAGTTCTAATGACTGATGAAACTGGCCGAAGAAACTACAGCAAGTACAACAAGTTTTTAGCCATGTCAGTTTTGAACGAAAACGGAGAGACGGTATTCCATTACATAGATCTGACGTCTTCATCCGATCCATCCATCGAGGGTATCGATTCCTATAGCGAAATTAATGAGAACTTTAACCAGCCATTAGACATGCAGCCGCTGAACCTACACATGACTAGTGATCTTAATGGTGAGCCATTTAACAGCCAAAACTTAGATCAAAAGAAACCTAAAAAGACGCTGTGGAAATGCAAGAAATGCAATTACagAGATCCATCAAAGGAGGCGTTATTAGAGCATGTCCGTAAACATTCGAGAGCTGACGGGAACCCAGAGGATATGAAATCTCAAAAGAAGCCAGAGAACCTTCCAGACCCAGCAGACTTGGCATACCGCTGCGGTCACTGCAATCAGTTATCGAACTGGAAACATGTGATACAGAGACACTGCCGCCTGAAGCACGATGGTGTTATCAAAGTCATAACTACAGTAAAACCTAAGCCAGACCCGTCATTGTCCTTAACCGAGATCCAAGGGGATACATGTAACAAGTGCCCGTTCAAGACAAATGACAACAAACTATTACTAGCGCACTTACAACAGCACCAACCTTCACCTCAATccatttttaagtgcttcttctGTCCCTTCTTTGTTAAAGATGAACACGAATTAATTCAACACCTAGTTTTACACGGTGTTAATGAACCAGAAGAATACATAGCAAAAGCGATGGGAAGCAAATCACCCGCTCCAGAGTCTGGGGCAGGATCAAATTCTGCGGCAAACTCATCTTCCACTAAGCGGCACAAATGCACGGAATGTCCTTACGAAACAAACAGCAAGTCCCAGTACATGTACCACGAGCAGTTCCACCGACTACCAGCAGACACGCCTTATAAGTGCCCCGAATGCAACTATAGCGTATCCAAGAGACATTTGCTTCACCAACATCTAAGGGTTCATGGGATAAACACCAAAAAGCTTGAAGCCGACTTAGAAGCTAAAAATGATTTGAAGATTGAAATTAATCTCGACGAAATCCCATTTGTTTGGGTTTCTGCTAAAAATGAATTTCATAAAATGTACAAATGTCGCTACTGTTCTTATGTTAATTCACAAAAGTGCAAAATTCCAAATCATGAAAAAATTCACtgcattatttttgaaaacagcGAAATCACAGTATACAAATGTTTGGAATGCAAATTTACATGTGATAGCGCTATAAGGCTAGCTGAGCACTCGAGATCCCACGGCGAGATATATGGTCGCATCTACTGTCCTGTTGACTCCGATATTCCCGATGAAGAGCAAATAGCTAAGTTACGTAAAGTGGTTGAAGCTGAAAAAAACTTCTCTCCAGATGGAGATATGAAGGAAGATGAAattgcaaatgaaaataaagaaagCAGAACACTTTATTTCTGTCAAAAGTGTCCGGGAAGATTTTTTTCTGACGAAGAACTTAGAATACATGACAAATTCCATGATTTATCGTTTCCACATAAATGCAAGAGCTGTGAATATTCCGTTTCAGAAGAAACTGACCTCGATGGCCACATAGTAGTGCATACAGATGAATATCATACAAAAACTAAAATGCTCAAGTTTATTCACAGTTGCAGTGCAGCACACAAACAACCTAATCTAGAATTAGTGCATTGTCCGACTACATCAGAAATAACTTGGGTGGTTTCAAGTCCTTGCAAAAATTATGACAATGAAACTAGCTCCAAAGGATCAAACGAAACAAGGCAAGTGCCAAAACAATATGCCTGCAAAGAATGTCCAGCTAGATTTATCAAAAGTTCGGCCCTTACCGGTCACATGGCATTACATGGAAGTAATTATCCTCACAAATGTAAATTGTGTAACTATGCTGTAAGGAATACAGGAAACTTGGCAAAACATGTAGCGTTGCATGAAAATGATGGTAAACCACCCACATGTGATTATGAATCAGGAGAAGATATGGATTATAAGAACATACCACTATCAGGAACAGATTTGTTCCAAAGAAAGACTGAGGCACAGAAAAGAGTGCTAAATGATAAAGATAAATTGGTAAAGCCCAATGATCATTTTCCACCGGTGCTGCAAGCAGATCCTCAGTTCGGGTACCTAATGCACGGCAATCCAGAGTTCATATACCCAACTTATTTGAAAAACGGTCGTCAGAAGGAAAAGCGTTACAAATGCCACAAATGTCCATCCGCGTTTGAGAAAAGAGAgcaatataaaatacatttatcacTACACGGATCTAAACAAAGGTACAAATGTGAGCTCTGTGACTATTCGGTGAAGTATTACGCTAACTATGTCCAACATATGAGAAAACATCAGATGAACGATGAAGCTCAGGCCGAAAGAAAGAAAACCAGTAATGGCATTATTGAAACTGGAACTCAAGAACACAAGCATGAAGATAGTGACAACATTAAATTAGCAATTAAAACAATGCCCAAAGGGACACCTAAGAGCGATTTTCAACAGTTTTCAATCAGTGATCAGCAAACGCTTAGATTACTGCAACGCAGACGCTCAATGAATAACAATGGTAAAGATCAGTCTTCGCCTTCAGAACCATCACCAACCAAAGACCGAAAATTACATATGTGTTTATTGTGCCCGTACACAAACCAACGCCAGGACGCATTGTTTAACCACTACAAACGACACGATGATACAGACGTTCTTCATACGGGTAATCATAAATGTTCTTACTGTGACCTTGTCGTGGTTCAGTCACATTTTCTGCGTGATCATTTAAAAACGCATTTTAACTACCAAAAGACATTGACTCCTGAATGTTTTGTCGCTAATGAAAATGTAAGTTTTACTATAACTAAGGTAGATGAAGACGATTCACCTATTGATCTCAAATTAGATGTGCAAAGCAAAATCGTGAAGTGCAATGAAGACAAAACTTTTGTTAACATACAAACTGGTGAAGTGATGGTCGAATAG
Protein Sequence: MLRQMSSPSNAQVGEVGSLVRPFERQCGDASSEASSDAADEDLPQCKIRRNYNCAKCTFYTQNPRAFLVHTRDVHFERFKIYDCPSCVYASRHHQKLVRHIKMVHGAAATTTFKMDVELPTATETTEPVERIEDLLEEVEECDDIEVDVDDCPEGPFERFVEYDADKSTTAEGRALLKSDNKFFSCSKCSYSTHIKARFKKHVKYHWMPMNKCTICDFRSPYKWNLDRHMKNHGGSGSFKCSMCNFTAEIKQSLTSHELNHHELTAGQSVASRRRNRVGASDVMNALVLKEEEGSGDSQSACSASEMGLQSADKEMISCNSDSNDATAADGSRKDGQTQEAHGQQSPNSTTEDSKSQKNNRKIPRPLPQLIPLHNSTPTNTKTFGEPPAKKFKESTNTEPTDPNKANKFENLPVDITLIPVSNIPSNTKENVGRKKNNSFFDKLKERLLTETGEEGSLICKNCGFESKCLSEHSVHEKNCTSQLNRTATNTLLPSLSSTRCQNCRQRCKSSADLFIHMKTCKKMEEKMEDDASVEIKSQDSNDGVIQERETEPHPMENVVFVWNNIHQDTNKFDTPLDININDDSTLPEMCRSYDSEIAEDNEGMNLSPSQAMGKKVFKCPHCPFWASTASRFHVHIVGHLNKKPFKCSLCKYKSNWRWDITKHIKLKSARDPEHNDAKVLMTDETGRRNYSKYNKFLAMSVLNENGETVFHYIDLTSSSDPSIEGIDSYSEINENFNQPLDMQPLNLHMTSDLNGEPFNSQNLDQKKPKKTLWKCKKCNYRDPSKEALLEHVRKHSRADGNPEDMKSQKKPENLPDPADLAYRCGHCNQLSNWKHVIQRHCRLKHDGVIKVITTVKPKPDPSLSLTEIQGDTCNKCPFKTNDNKLLLAHLQQHQPSPQSIFKCFFCPFFVKDEHELIQHLVLHGVNEPEEYIAKAMGSKSPAPESGAGSNSAANSSSTKRHKCTECPYETNSKSQYMYHEQFHRLPADTPYKCPECNYSVSKRHLLHQHLRVHGINTKKLEADLEAKNDLKIEINLDEIPFVWVSAKNEFHKMYKCRYCSYVNSQKCKIPNHEKIHCIIFENSEITVYKCLECKFTCDSAIRLAEHSRSHGEIYGRIYCPVDSDIPDEEQIAKLRKVVEAEKNFSPDGDMKEDEIANENKESRTLYFCQKCPGRFFSDEELRIHDKFHDLSFPHKCKSCEYSVSEETDLDGHIVVHTDEYHTKTKMLKFIHSCSAAHKQPNLELVHCPTTSEITWVVSSPCKNYDNETSSKGSNETRQVPKQYACKECPARFIKSSALTGHMALHGSNYPHKCKLCNYAVRNTGNLAKHVALHENDGKPPTCDYESGEDMDYKNIPLSGTDLFQRKTEAQKRVLNDKDKLVKPNDHFPPVLQADPQFGYLMHGNPEFIYPTYLKNGRQKEKRYKCHKCPSAFEKREQYKIHLSLHGSKQRYKCELCDYSVKYYANYVQHMRKHQMNDEAQAERKKTSNGIIETGTQEHKHEDSDNIKLAIKTMPKGTPKSDFQQFSISDQQTLRLLQRRRSMNNNGKDQSSPSEPSPTKDRKLHMCLLCPYTNQRQDALFNHYKRHDDTDVLHTGNHKCSYCDLVVVQSHFLRDHLKTHFNYQKTLTPECFVANENVSFTITKVDEDDSPIDLKLDVQSKIVKCNEDKTFVNIQTGEVMVE

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00365400;
90% Identity: iTF_01280902; iTF_01279788; iTF_01282900;
80% Identity: -