Pnig007158.2


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Pyrausta nigrata
Gene Symbol
-
Assembly
GCA_949316185.1
Location
OX438940.1:14750356-14760494[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 23 0.0061 0.55 11.7 1.0 3 23 745 766 744 766 0.96
2 23 0.43 39 5.9 0.3 1 22 1154 1175 1154 1175 0.95
3 23 8.4 7.6e+02 1.9 0.3 1 22 1216 1237 1216 1239 0.82
4 23 0.065 5.8 8.5 2.2 2 21 1249 1268 1248 1269 0.94
5 23 2.5 2.2e+02 3.5 0.1 2 23 1277 1299 1276 1299 0.89
6 23 0.0075 0.68 11.4 0.1 3 23 1320 1341 1318 1341 0.96
7 23 0.0096 0.87 11.1 2.4 1 23 1347 1370 1347 1370 0.95
8 23 0.16 14 7.3 0.0 1 23 1396 1419 1396 1419 0.90
9 23 0.0069 0.62 11.6 3.5 1 23 1424 1446 1424 1446 0.97
10 23 0.021 1.9 10.1 0.2 1 23 1452 1475 1452 1475 0.95
11 23 0.0013 0.12 13.8 1.3 1 23 1488 1510 1488 1510 0.98
12 23 0.0018 0.16 13.4 4.0 1 23 1559 1582 1559 1582 0.96
13 23 0.0032 0.28 12.6 1.4 1 23 1647 1670 1647 1670 0.96
14 23 0.0014 0.13 13.8 2.1 2 23 1687 1709 1686 1709 0.95
15 23 0.11 9.9 7.8 0.1 2 23 1715 1737 1714 1737 0.93
16 23 0.012 1.1 10.8 0.2 1 21 1782 1802 1782 1803 0.95
17 23 0.0015 0.14 13.6 0.6 1 23 1813 1835 1813 1835 0.93
18 23 0.00035 0.031 15.7 0.2 2 23 1922 1944 1922 1944 0.93
19 23 4.2e-07 3.8e-05 24.8 1.4 3 23 1951 1971 1950 1971 0.98
20 23 0.0073 0.66 11.5 0.3 1 23 1989 2011 1989 2012 0.95
21 23 0.15 14 7.3 0.0 1 23 2033 2055 2033 2055 0.97
22 23 0.023 2.1 9.9 1.4 1 23 2061 2084 2061 2084 0.95
23 23 0.00032 0.029 15.8 0.4 1 23 2092 2115 2092 2115 0.96

Sequence Information

Coding Sequence
ATGAGTGTGAAATATGATCGTGTTTGTAGACTGTGCTTGTCATCTCGAGGCGAATTACTGCCGATTTTTCCTACCACCAGTTCGGATGACTCGGATCCTCCCGTCCTTGCCTCGAAAATCAAGGATTGTGTCTCTGTGCAGATAAGCGAGAATGACGACCTACCAACGAATGTCTGCAGGAAATGTGTGGATAATGTCAATAACTGGCATATTTTCAAGTCAGTGTGTGAAAGGACACAAAACAAACTAGAGTTGCTGATAAAAAAGGATGTCAGCCAACTAGAAGAGATAAAAATAAAGAGTGAACCCCTGTCTGATGAGGCTTATGATGATGGAGTGGTCATTGATGGGTCATACCCTCACATTGAGAATGCTGCTGGATCCAGTAAGGTGCAACCAGAAGGTCCACCTATCTTGGCGTCATTGGGGCTTACTCCACGAAGTGATAAGAAATATGTAGACCCTCGTATGGACTGGCAACGAGTCCATGCAATATTGGACATGGTGCAAGATGATGATGTCATTGATTCACTTCAGTCCATCGAGGAGTGTGATGTTGTGCAGCAGTCTGATCACAACTCTGACTCAGAGGCCGAGCTACAAATGGAAATTGATGACCAATACATAGACTGCAAAACTGGATATATGTGCAGAAATCAGACAGTCCTTTCCAAAAATCCGAAACTACCAACAGCAGCAATTAACTCAAAGATTAAAGAAGCTTCTAGGTTAAGAAAATACAAGTTAGGAACATCAAAGTTATGTGCGCAACCTAAAAAGGCATGGCAGTTGCTCTTCACAGATGACTTGCTTGACTTAATTGTTGCATCTACTAATGATAACATTCTCAAAACTGGGAATGACATGATAACATCAACGAATGCTGGGGAAATAAAGACACTCATTGGAATATTATATCTGCATGGCATAATGAGACCGACACATCAAAGTGTGCGTGACCTTTGGAATAAAGACTGTGGAATTCCATGTGTCAGATCCGCAATGAAGTATGAGCGATTTAAATTTCTTATCCAGAACATGAGTTTTGATAAGGACAGTGATGACAGCATAATACAATTTGATATAATGAAAAGAATGCGTAAGGTGTTCGAAATATTCGCAATGAACTGCAGAACTGCTTACGAGGTTGATAACTTGGTTGTCATTGATGAGGTCATTGTCCCAGTTTATGGGCCATGTCCATTTCGGTTCAATATTGATAAGAAGCCGCTAAAACGCGGTTTGAAAATGGTACTTCTGGTTGATTCCGCGAGTTTTTATATCAGCAATTTGGATATAATTACAGATCACTATTTTGGAGCTGAAGAAGTTGTCAACAAAATGGTTCAGCATTTGGCTGGCTCTGGTAGAACTGTGATGATGGATAGTTGGTATACTTCATTGGATTTGATAGATAAACTCAAGAGAGAATATCAGTTGTTCTCGATTGCATCCGCTCATCCGAGCGACGACATAATACCGCCTCTCTTTGTTTCTCAATACAGAAAATGTAAGACATTTTTAACTGGATTTCTGGACAGTGATGTCGCCATGACGTCGTATATGAATTCCAAGAAGAAGTCGTTGAATGTGTTGACGAATGATCCGAAGTTTTATAAAAGGGGCCATAAGAATCATAGCACAGTGGCTGCTTTGTATAGGAAGAACCAATCTGCTGTTGAAGTTATAGATGTGCTGATGCACTATTACACGACTATGCAGCACACTAATGATTGGACCCTTTCTTTGTTTTTTACTCTACTTAATATAGCTGCGGTTAATGCTCAAGTGATATGGTCTTCACAGAATTTGCACCAAGTAAAGAAACGTCGAACATTTATAAATGGCCTCGCTTTCAGCCTATTAGAATGTGAGGAGTCTCTTGCAGATGTTTGCATGACTGATGTTTCGCTCTTACGAGAAAAATTTGCTCATTTGAAAGATGTGTCATACAAAAACAGAAGGAGGTGCAGGATTTGCGTAAAAACCACTAAAAGAGACAGGAGAACAAAACAGTTCTGCCTCAAGTGTGGGCAGTTCATATGTAAAGAGCATACAGGTATTGAAAGTGAGAAAGATGACGAAGAAGAAGAGGATGAAGAAGAGATGACCCGACCAGTGAAAAAGTACTCCAAAGTGCCCAGCATGCCTGAAGTGTCCATCACCGTAATGCGTCCCACCGGAGAAACGTTAAGTGCCCGACAAGGCATACAACAACTCGCTTCCAAAGACTGCCTCGTGTGTGGCCGGTCCTACAGGTATTCCCACAATGCCAGGCGACACGAGCTCACCGCTCACAGCTTCGATAGGTACACCAACAAAGCTACATACAAAAAACCTTCACACATGCAACCAAAACTGAGACCAAATCCATTTAATCCAAAAGCTAGGCTTATGCCGAACCCTATTAGCCATAAAATGCAACTTCTTTCTAAACCAATGCTGTCGAAAATGATACCCCACCAAGTTATCAATCCACCAAAACCGGTTCTTGTAAAATTGTCAAAAACAGCCCAACATAACTTACCATACCCTCTTCGTATAAAAGCTCTTAAAGActtacaaataaagaaaaaagaaccccaaatattaaaaacacttcTTACATCTAAACCAGAAGTACTTGTATCTGAACCTGAAATCGTAAACTCCGGTCCTGAAAGCCCAGAAACTTTGATTTCGGAACCAGAAATTGCGTCATTCCAAGTGGAAACTATATTGTCAGAGCCCGATGCCTACGATCAGCCGCAGGGCGAAGAAGAAATAGATGGCGATATGACTAACCACCAAAGTCAAAACTACGACACAGTCGATATGGAGTCGGACAATGAAATAGAGATCGCACGAGAGCAAGACCAAGATAACGAAGGTGAAGAAGAAGATCACAACGTTGAAGATGAGAATAACCAAATTGATGAAGAAATGAATCACTACGAAGGCCAAAGTGATACCGAAAAAGATGCCGTTGAAGCTGAAGGAAATATCGAAGAAAATGACGAGCATATCGGAATTGACGAAAGTGATCTCAAAGCTGCAGAAGAAAACCAGGATAGAGACGATGCTCACGAAGAAGGAGACAATGATGTTCAAGATCTGATCACAAATCATGATGAGAATCGCGAGGAAGACGATGAGGAACTCCCTCCGATGGAAATAGCACCAGTTGTTGAAATTAACGAGGATATGCAAACAAACTCGTACAACAGTGAAGTGAATGAGGAAGAAGAAGAGGAACTTGAAGTATCAGCTGAACTAAACGATACAGCGGAAGAAGAAATAGTCAAAGAACTAGACCCGGACAAATTGTACGTTACTAAAACTCAAAGAGATTTTATTCAGAAATATCGTGATATCATTCAGCAAATCAATACTAAACGTTGTTTATGCTGTGACCGCGAGCACCCTCGTAGGAAAGCGGTCATCCAACACTTACAAAAGAATGGGCATAAGGTTCCTAAGCACACGTGCTACAATTGTGTAGTAACATTCGGACATATCGGCGCCCTGCTCAGTCATATGAGATCCAATAGCTGCACTAActtatggaaaataatttataacGAAAATGGAATAACTGATGACTTAGTCCTTGAAGAGCCAAAAGGTAATAAAATTCTGTATAAAGATATCTTCAATGCAAGATCATACGCTTGTAAATTATGCCCTGCGAAATTccagttgaaacaatttataatgaaACATGTTTTAGATGTTCACGAAGACGGCCAGTCTAGAGTGCCTCTCCATTGTGTGCATTGCAGAGCAAGGTTCAAAGATAGGAGTCTTATCAAAAAGCATATTCGTAATGGTGAATGCACAGTAATCATTTCATGTGATCTTTGCTCAGAGAAGTTCGGAAATATACAAGATTTCAACGATCACGCCTTGGCTGTTCATGCCGGAAGTTTTGACCAATCTGATAATCAAAACAAGTGTGTCGACGGACGTCCTACTGATTGTCCAATTTGTGGAAAGAAGAATAGTAGCTACCCGAATTTGGTAAAACATTTGAAGATAATTCACAATGAGGAGAAACCTCATTACTGCCAGCACTGCGACTCCAAATACGAACAAGCTGCAGATCTTAACAAACATATTTATATGGAGCATTCTGACAGAAGTTTGGGTGTGCAAAGCACCGAACCTGACATGTCCTTAGTTAAGGAAGAGGCGGAGGAATATCACTATTCTTGTACAGAATGTAATGCCATATTTGAAACCGTCGACGCTTGGACGGATCATCAGGTTGCTGAACACAATCAAATCGCTCACCACTGCGACCAATGCGACAAGAAGTTCTTGCGCCCATCCGAGCTCGCCGAGCATAAGAACACCCATTTGCGTGTCAAATTCTATCCTTGTAGCGTTTGTACTAATTCTTACAGCACCCCACAAAAACTTTCTGAGCATGTTCAACAAGCGCATCCTGGCGCTGGTGCACTCGCTACAATGGAAACAGAGTTCTATTGTGACATATGCATAAGATCATTCAAAAGTCGTCAAGCCTATTCCAATCATATGCGTATTCATTCCAAAGTTCCCACGACTAACAGGAAACCCGGGGAACAGAAAGGTTTCGCGCCACAAATTATTGGAAAACCTATCAAACAATTTACTGCCGTTCAACCTGGTTTCGTGGCATTTAAACCAAATTGCAACGTGCCCAATGCCCCGTACTGCTGTGATATATGTGGAAAAGGATTTATgcataagaaaaatatttggaaACATAAGAAagttctacatgctgacctcatCAATGAAAGACATGACAGAAATGACAGTGAGGAAAATACTATGCAAGCATCTACTGAAGATGATGAGTATAATGCTGATGAAAATGGAGCTATTCTGTCAACTCCTCAGTTCAATAGTTTCAATTTTACGAACTTCGCTAATAATATACAACAGTCAACTCCCCAAGCGGATGCGTTGCCGTTCTCTTGCGAACTTTGTTCCAAGCGGTTTCCTCTTCGAACCAGTTTATGGAAGCACAAAAGAGCTAAGCATGGAATTTCCGGCGCAGATAACCAACCAAGCGAAGCCGGTAGCAGGTCGAGTTGCACGATTTgcaaaattacattttcagACAAAAAGTCTTACTACCGTCATCGAAAGAACGTCCACAAATCGTCATCTCAGATGTGTAAGATTTGTGGCAAGCCTCTGAATTCGACGCTGGAGTTATATGAACATCTCAAAGCCGCTCACGCTCGCGAACTGTTGGGCTATAATGCGAACCAAGGTAACAATAGCAAGATGCAAGATAACGAACAGGAGCTCGACCCAGATTACGAAAATGATCAAGATTCTGCAGATCCAAGTGTAGAGTTTCAAGCTAGATATCCTTGCGACACTTGCGGTAAACAATTCGTCGGTTTGCTCGCTTTACAAAACCACCAGTGTATCAATCAGGTCTCAACGCAACCTCAAACCTTCGATTGCGAAATCTGTCATAAGAGCTACACGTCTATTGCGGCGCTGAAGAGCCACCGCGGTTGGCATTTACGCTCGCCCGATGGCAAAGCGGCCGCCAACAATTCTGGGCTATGGATGCCACAGCACAAAGTGACCAGCAAGGTCAGTAAACACGAGGTCGTCGACCCTGTCCAACTCGCCCGCGTGTCGCATTCGTCGCCCGCCGCGAGCGTAACTAAGCGAAGATTACCTCCGGAAGTCGAGGTGACAGTCGTGAACCCGAATAAAAAGTTGCGTTCGGACGACTCCGTAGAAATGGACCAGGGGTCGAGCGTGGAGGATAGGTACTGCAATATATGCGACAAAGAGTTCACAAAGCGGGCCGCCTACCTGCGGCACATGGACGAGGTGCATCAACCTAATTCGGTGTTCTGTCCGGTGTGCGACAAGAGTTTCACGCGTAAGTCGACTTTGTTGGTTCATATGAAGAAGCATTATGAGGGTGGCGAGGGCAGCTCGTCTGGTCTAGCTCAAGATGAGGAGGATTACGCGTGTGACTTATGCGGGGCGCAATACGATACGGAAAAGGCGTTAAAGGCTCATAGGGCGAGACACCACGGGGAGGAATCTGGGGAGTCTGAGGACGACGGGGGCATGGTGGTTCCTCAACCGAGTGAGTTTACCTGCGGCCAGTGCGGCGACGGAGTGGCAACGCCGCGGGATTTGATAGCGCACCGTACGATGCACGCTACCCCTTCCAAATTCTTCTGCAATATTTGCAAAGTGCACTTCGCCCGCGCTCTTGACCTGTCGTCGCACACGCGAGCGAGACATTCGGACAACGAGAAGGTATTTTTCCCCTGTGCCATGTGTGACCGTTTCTATATGAACAAGAAGAGTTTGCAGCGACACATTGAGATGGCTCATTGa
Protein Sequence
MSVKYDRVCRLCLSSRGELLPIFPTTSSDDSDPPVLASKIKDCVSVQISENDDLPTNVCRKCVDNVNNWHIFKSVCERTQNKLELLIKKDVSQLEEIKIKSEPLSDEAYDDGVVIDGSYPHIENAAGSSKVQPEGPPILASLGLTPRSDKKYVDPRMDWQRVHAILDMVQDDDVIDSLQSIEECDVVQQSDHNSDSEAELQMEIDDQYIDCKTGYMCRNQTVLSKNPKLPTAAINSKIKEASRLRKYKLGTSKLCAQPKKAWQLLFTDDLLDLIVASTNDNILKTGNDMITSTNAGEIKTLIGILYLHGIMRPTHQSVRDLWNKDCGIPCVRSAMKYERFKFLIQNMSFDKDSDDSIIQFDIMKRMRKVFEIFAMNCRTAYEVDNLVVIDEVIVPVYGPCPFRFNIDKKPLKRGLKMVLLVDSASFYISNLDIITDHYFGAEEVVNKMVQHLAGSGRTVMMDSWYTSLDLIDKLKREYQLFSIASAHPSDDIIPPLFVSQYRKCKTFLTGFLDSDVAMTSYMNSKKKSLNVLTNDPKFYKRGHKNHSTVAALYRKNQSAVEVIDVLMHYYTTMQHTNDWTLSLFFTLLNIAAVNAQVIWSSQNLHQVKKRRTFINGLAFSLLECEESLADVCMTDVSLLREKFAHLKDVSYKNRRRCRICVKTTKRDRRTKQFCLKCGQFICKEHTGIESEKDDEEEEDEEEMTRPVKKYSKVPSMPEVSITVMRPTGETLSARQGIQQLASKDCLVCGRSYRYSHNARRHELTAHSFDRYTNKATYKKPSHMQPKLRPNPFNPKARLMPNPISHKMQLLSKPMLSKMIPHQVINPPKPVLVKLSKTAQHNLPYPLRIKALKDLQIKKKEPQILKTLLTSKPEVLVSEPEIVNSGPESPETLISEPEIASFQVETILSEPDAYDQPQGEEEIDGDMTNHQSQNYDTVDMESDNEIEIAREQDQDNEGEEEDHNVEDENNQIDEEMNHYEGQSDTEKDAVEAEGNIEENDEHIGIDESDLKAAEENQDRDDAHEEGDNDVQDLITNHDENREEDDEELPPMEIAPVVEINEDMQTNSYNSEVNEEEEEELEVSAELNDTAEEEIVKELDPDKLYVTKTQRDFIQKYRDIIQQINTKRCLCCDREHPRRKAVIQHLQKNGHKVPKHTCYNCVVTFGHIGALLSHMRSNSCTNLWKIIYNENGITDDLVLEEPKGNKILYKDIFNARSYACKLCPAKFQLKQFIMKHVLDVHEDGQSRVPLHCVHCRARFKDRSLIKKHIRNGECTVIISCDLCSEKFGNIQDFNDHALAVHAGSFDQSDNQNKCVDGRPTDCPICGKKNSSYPNLVKHLKIIHNEEKPHYCQHCDSKYEQAADLNKHIYMEHSDRSLGVQSTEPDMSLVKEEAEEYHYSCTECNAIFETVDAWTDHQVAEHNQIAHHCDQCDKKFLRPSELAEHKNTHLRVKFYPCSVCTNSYSTPQKLSEHVQQAHPGAGALATMETEFYCDICIRSFKSRQAYSNHMRIHSKVPTTNRKPGEQKGFAPQIIGKPIKQFTAVQPGFVAFKPNCNVPNAPYCCDICGKGFMHKKNIWKHKKVLHADLINERHDRNDSEENTMQASTEDDEYNADENGAILSTPQFNSFNFTNFANNIQQSTPQADALPFSCELCSKRFPLRTSLWKHKRAKHGISGADNQPSEAGSRSSCTICKITFSDKKSYYRHRKNVHKSSSQMCKICGKPLNSTLELYEHLKAAHARELLGYNANQGNNSKMQDNEQELDPDYENDQDSADPSVEFQARYPCDTCGKQFVGLLALQNHQCINQVSTQPQTFDCEICHKSYTSIAALKSHRGWHLRSPDGKAAANNSGLWMPQHKVTSKVSKHEVVDPVQLARVSHSSPAASVTKRRLPPEVEVTVVNPNKKLRSDDSVEMDQGSSVEDRYCNICDKEFTKRAAYLRHMDEVHQPNSVFCPVCDKSFTRKSTLLVHMKKHYEGGEGSSSGLAQDEEDYACDLCGAQYDTEKALKAHRARHHGEESGESEDDGGMVVPQPSEFTCGQCGDGVATPRDLIAHRTMHATPSKFFCNICKVHFARALDLSSHTRARHSDNEKVFFPCAMCDRFYMNKKSLQRHIEMAH

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00961156;
90% Identity
-
80% Identity
-