Pdes003874.1
Basic Information
- Insect
- Pyrausta despicata
- Gene Symbol
- Gcfc2
- Assembly
- GCA_963921415.1
- Location
- OY992846.1:3987558-4016105[-]
Transcription Factor Domain
- TF Family
- GCFC
- Domain
- GCFC domain
- PFAM
- PF07842
- TF Group
- Unclassified Structure
- Description
- This entry describes a domain found in a number of GC-rich sequence DNA-binding factor proteins and homologues [4, 5], as well as in a number of other proteins including Tuftelin-interacting protein 11 [1]. While the function of the domain is unknown, some of the proteins it is found in are reported to be involved in pre-mRNA splicing [1, 2]. This domain is also found in Sip1, a septin interacting protein [3].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 8 0.0053 1e+02 3.4 0.0 4 40 454 490 451 492 0.89 2 8 0.0068 1.3e+02 3.1 0.0 4 40 490 526 488 531 0.88 3 8 0.0089 1.7e+02 2.7 0.0 5 40 527 562 524 565 0.88 4 8 0.007 1.3e+02 3.0 0.0 4 40 562 598 560 602 0.88 5 8 0.0092 1.8e+02 2.6 0.0 5 40 599 634 596 636 0.87 6 8 0.0081 1.5e+02 2.8 0.0 4 40 634 670 632 672 0.88 7 8 0.007 1.3e+02 3.0 0.0 4 40 670 706 668 710 0.88 8 8 1.7e-06 0.033 14.9 0.0 105 187 781 851 772 861 0.74
Sequence Information
- Coding Sequence
- ATGAGCAGatTAAAAGAACTCCAAACAACTCGCGACGACACTGCATCGAAACGCGACGAGCTCCGCGACCGGTTAGTGGCGGCGATACGCGTGCGCGAGTCGCGCGGCGCCCGCTGCGCAGAACTGGACGCGGCGTACAGACGCGCGCAGGCTATTCGGGGGTACATCACCGACCTCATCGAGTGTCTGGACGAGAAGGTGAGAGATATTGGAACCCTCAAGTATTATAAGTCAATCTGCACCCGCTGCGCCGAATTGGACGCGGCGTACGGACGTGCTCAGGCAATCGGGGGATACAGCACTGACCTCATCGAGTGCCTCGACGAGAAGATGCCAGAACTGGAAGCGCTAGAAACGCGAGCCCTGGCGCTGCACAGGTGGCGCTGCGAGTACTTAGTGGAGAGGCGGCGCGCTGACGTGAGGGATCAGGCGAACGACGTGCTGGCGCTCACTGCCCGGCCCGGCGCGGCGAAGGCCGTGGAGACGGAGGAGAAGCGGCGTCGCTGCGCCGAGCGCGAgggccgccgccgcgcgcgccgccgccgccgcgagCACCACGCCGCCGCCACCGGCGCGCCGCCGCAGCACAGGTACCACACTCTACTGTCACCAGCCCGGCCCGGCGCGGCGAAGGCCGTGGAGACGGAAGAGAAGCGGCGTCGCTGCGCCGAGCGCGAgggccgccgccgcgcgcgccgccgccgccgcgagCACCACGCCGCCGCCACCGGCGCGCCGCCGCAGCACAGGTACCACACTCTACTGTCACCAGCCCGGCCCGGCGCGGCGAAGGCCGTGGAGACGGAAGAGAAGCGGCGTCGCTGCGCCGAGCGCGAgggccgccgccgcgcgcgccgccgccgccgcgagCACCACGCCGCCGCCACCGGCGCGCCGCCGCAGCACAGGTACCACACTCTACTGTCACCAGCCCGGCCCGGCGCGGCGAAGGCCGTGGAGACGGAAGAGAAGCGGCGTCGCTGCGCCGAGCGCGAgggccgccgccgcgcgcgccgccgccgccgcgagCACCACGCCGCCGCCACCGGCGCGCCGCCGCAGCACAGGTACCACACTCTACTGTCACCAGCCCGGCCCGGCGCGGCGAAGGCCGTGGAGACGGAAGAGAAGCGGCGTCGCTGCGCCGAGCGCGAgggccgccgccgcgcgcgccgccgccgccgcgagCACCACGCCGCCGCCACCGGCGCGCCGCCGCAGCACAGAGATGGCGATTCAAGTGACGACGAGCTACCTCCAGCGGAACTAAGTCACTATCAGCGAGAGCGAGACGCGATTCGTGCCGGCAGCGCTCAGTTGTTCGCCGACGCGCTACCAGCGTGGCGCAGCGTGCGCGGCGTGTGCGCCCGACTAGCGCGGTTCCGGCGCCGCTCGCCCGCGCTGTACGGCGACGCGTACGTGTGCGCGTGCCTGCCGCGCCTGCTCGCGCCCTACGTCCGCCACCAGGTACTATACAGACTAGCGCGGTTCCGGCGCCGCTCGCCCGCGCTGTACGGCGACGCGTACGTGTGCGCGTGCCTGCCGCGCCTGCTCGCGCCCTACGTCCGCCACCAGGTACTATACAGCCTAGCGCGGTTCCGGCGCCGCTCGCCCGCGCTGTACGGCGACGCGTACGTGTGCGCGTGCCTGCCGCGCCTGCTCGCGCCCTACGTCCGCCACCAGGTACTATACAGACTAGCGCGGTTCCGGCGCCGCTCGCCCGCGCTGTACGGCGACGCGTACGTGTGCGCGTGCCTGCCGCGCCTGCTCGCGCCCTACGTCCGCCACCAGGTACTATACAGCCTAGCGCGGTTCCGGCGCCGCTCGCCCGCGCTGTACGGCGACGCGTACGTGTGCGCGTGCCTGCCGCGCCTGCTCGCGCCCTACGTCCGCCACCAGGTACTATACAGACTAGCGCGGTTCCGGCGCCGCTCGCCCGCGCTGTACGGCGACGCGTACGTGTGCGCGTGCCTGCCGCGCCTGCTCGCGCCCTACGTCCGCCACCAGGTACTATACAGACTAGCGCGGTTCCGGCGCCGCTCGCCCGCGCTGTACGGCGACGCGTACGTGTGCGCGTGCCTGCCGCGCCTGCTCGCGCCCTACGTCCGCCACCAGGTACTATACAGCCTAGCGCGGTTCCGGCGCCGCTCGCCCGCGCTGTCCGGCGACGCGTACGTGTGCGCGTGCCTGCCGCGCCTGCATACTTTCACTtacacgaaaaaaaaactggcaTTCAGATGTCTCATGATGTACGGCGTCCGTCCGGAGAAGCTTTCATCCGGCTCGTCCGGTTCCGAGGACGAATCCGACCCGATACCGGCCGTCACTGAGCAATCCGTCCGGGACGATCCGGATTTGGGTCTCGTGCCGGCAGTGGTGGCTAGAGTAGTATTGCCCAAGCTTACAGAGCTAGTAGAGCAAGCGTGGGACCCGATGTGCGTGCGCGCGTGCGTGCGGCTGCGCCAGCTGCTGCTGCGCGCGGCCGCGCtgcccgccgcgcgcgcgccgctagCCCGCctcgcggccgccgcgcgcgcgcgcctgcgggccgccgcgctcgccgacGTGTTCTTACCGCCGCAGGTAACGGAAGGCGCGGGCAGTGCGTTCTGGAAGCGTTGCCTCGGCGCGGGCGTGCGGCTGCTGCGCGCCACGCTGGCGCTGACGGGCCCGCCGAAGGTGCTGCACGCTGACCCGTTGGTGCTGGCACTTATAGACACACTGAGctgtgcggcgggcgcggcggcgggcccGCTGGCGGCGGCCGCGGGCGCGGCGCTGGCCGAGACGCTGCCGCGGAGCGGCGAGCTGCGCGCGCACGCGCTGCGGCGCCTCGCGCGACTCGCCAACGTCGCCCTCTCGCGCCTCGAGACCGACAACCCTCTGCACCTAAAATCGATAGAGCAAGCGCGATCCGTGATAGCCGAGTCGCGCGCGATGGAAGCGCAGTCATAG
- Protein Sequence
- MSRLKELQTTRDDTASKRDELRDRLVAAIRVRESRGARCAELDAAYRRAQAIRGYITDLIECLDEKVRDIGTLKYYKSICTRCAELDAAYGRAQAIGGYSTDLIECLDEKMPELEALETRALALHRWRCEYLVERRRADVRDQANDVLALTARPGAAKAVETEEKRRRCAEREGRRRARRRRREHHAAATGAPPQHRYHTLLSPARPGAAKAVETEEKRRRCAEREGRRRARRRRREHHAAATGAPPQHRYHTLLSPARPGAAKAVETEEKRRRCAEREGRRRARRRRREHHAAATGAPPQHRYHTLLSPARPGAAKAVETEEKRRRCAEREGRRRARRRRREHHAAATGAPPQHRYHTLLSPARPGAAKAVETEEKRRRCAEREGRRRARRRRREHHAAATGAPPQHRDGDSSDDELPPAELSHYQRERDAIRAGSAQLFADALPAWRSVRGVCARLARFRRRSPALYGDAYVCACLPRLLAPYVRHQVLYRLARFRRRSPALYGDAYVCACLPRLLAPYVRHQVLYSLARFRRRSPALYGDAYVCACLPRLLAPYVRHQVLYRLARFRRRSPALYGDAYVCACLPRLLAPYVRHQVLYSLARFRRRSPALYGDAYVCACLPRLLAPYVRHQVLYRLARFRRRSPALYGDAYVCACLPRLLAPYVRHQVLYRLARFRRRSPALYGDAYVCACLPRLLAPYVRHQVLYSLARFRRRSPALSGDAYVCACLPRLHTFTYTKKKLAFRCLMMYGVRPEKLSSGSSGSEDESDPIPAVTEQSVRDDPDLGLVPAVVARVVLPKLTELVEQAWDPMCVRACVRLRQLLLRAAALPAARAPLARLAAAARARLRAAALADVFLPPQVTEGAGSAFWKRCLGAGVRLLRATLALTGPPKVLHADPLVLALIDTLSCAAGAAAGPLAAAAGAALAETLPRSGELRAHALRRLARLANVALSRLETDNPLHLKSIEQARSVIAESRAMEAQS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -