Paur009413.1
Basic Information
- Insect
- Pyrausta aurata
- Gene Symbol
- -
- Assembly
- GCA_963584085.1
- Location
- OY757258.1:1204218-1210455[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 14 1.3 1.1e+02 4.4 2.2 2 23 33 54 32 54 0.96 2 14 6e-05 0.0052 18.0 2.6 1 23 92 115 92 115 0.97 3 14 0.00035 0.03 15.6 4.2 1 23 117 139 117 139 0.98 4 14 2.7 2.4e+02 3.3 0.1 1 9 174 182 174 196 0.74 5 14 0.31 27 6.3 1.5 3 20 228 245 226 249 0.84 6 14 4.8 4.1e+02 2.6 1.9 3 15 258 270 256 278 0.77 7 14 6.9e-05 0.0059 17.8 0.7 1 23 284 307 284 307 0.97 8 14 0.0068 0.59 11.5 0.4 1 23 318 341 318 341 0.96 9 14 0.00014 0.012 16.9 0.1 2 23 346 369 345 369 0.95 10 14 3 2.6e+02 3.2 0.1 3 20 375 392 375 395 0.90 11 14 0.00019 0.016 16.4 0.1 1 23 400 422 400 422 0.95 12 14 0.00018 0.015 16.5 4.8 1 23 428 450 428 450 0.97 13 14 5.1e-05 0.0044 18.2 1.5 1 23 456 478 456 478 0.96 14 14 3.7e-06 0.00031 21.8 1.4 1 23 484 507 484 507 0.97
Sequence Information
- Coding Sequence
- atggcTGCTCTTTCAAAGTGGGTCCCAATAGAGGCAGCCACAGACCAGCCTCAGCCACATTTAAAACTCACTACCATCGACAAAATTGGTGGTATTTACTGCCATATCTGTCACTCAACCATTGGAAACAAAAAGGATTATGATGCTCATTACATAAAGCATGAAACTGGAAGTAAAGACATCACATACACATGCGTTGTTTGCCGTAAAGATATAGTGGGCTATCCCAGCTTCAGAGGACATTGTTACACAAACCATGTCATAAAAGATAAATTCAAATGCAACCACTGTGACAAGCTGTTTTCAAAACAAACTGCACTCCTGAGCCATTTAGACACTATGCATCAGTTCAAATGTTCAACTTGTCATAATAGATTCAAATCTCAAAAAGAACTTACAATGCATCAGATAATTCACAAAAAAGAGCTTACTCCACCATACAACTGTCAAGTTTGTAACAAGTTAATTGAAGATACCAATGATTGCGAGCAACATTTGGAGGATCATAGCACCACATCCTACTCTTGCCCTATTTGTGACGAAGGCATCATTAATATACAAGATGGGGCTCATCATCTCGCTAAGCATTTTGGTGAAGTACTTACTAATTATGATGAATCAGATTCAGATGAAAACGAATTTGCTAATGATAGCTCAATAGATCTTCTCGGTGGCATTTTCTGTTCACACTGCAACAAAAACTTCAAAGCCAGACCAGAGTTTGACACCCACTTTGTACTTGAACACGAAGATAAGAACATAATATATGGCTGTAACATCTGTGGCAAGGAGTATGAGAAATACCTTTTCTTTGCTAACCACTGCTACAATCACTGTACCAAAGATAAGTTCAaGTGCGAAGTGTGCTTCAAACGTTTCCCGCGCCTTTCCCTGCTGGTGATCCACACTGAGACCTACCACTCGGGCGCCGGCGGCGGCGCGGCGTACCCCTTCACGTGTCAGCAGTGCGGCCTCGGACTTCGAACTGCGAGGCGCCTCAGAGATCACAGGCGCGCCGAGCATAACTGTTCTAGCGAGTGTCCGCAGCAGGGGTGCGGGAAGATCTTCAACACGCCGAAGGAGCTGGTGCTGCACCTGAAGGAGCACAGCGGCGGCGCGTGGTGCCGGCGCTGCGGGCTGCGGTTCGCGGCGCCCTCCGCGGCGCTGCGGCACCTGCCCGTGCACCGCACCACGCTCTACGCCTGTCCCGTGTGCGGCAAGGCCTACGGCGAGAAGTACCTGCTCATGAAGCACGTGACGCAGCACTTCTCGTCGGTGCTGCACGTGTGCAAGATCTGCGGCCGCGTGTACTCGCACCGGCACCGCCTCGCGCAGCACCTCAAGGTGCACGCCGAGGCCAAGgCGCACGCGTGCGACACGTGCGGCAAGGGTTTCGCCAAGCGTTTCCTCCTCAAGCAGCACCAGAACATCCACGCCGGCGCGCGCCCCTACCGCTGCACCAACTGCCCCAAGACCTTCGCCAGCGTGCCCAACTTCAAGCGGCACATGAAGAACATGCACAACGTCACGCGCATAGACAACAAACTGTTCATCGACGAGGCcaacaacaaaaacaatacgAACAACCAGGAAAATAATGTAACCCCATCGAGCTCTGTATCCGAATCGTTAGATATACCAGCTGAGTTCGATGAGTCGAATGAGTCGTGCGGATGGAATCTGGATCAGCTGGACCCGCAGGTGATGCGGATGATCGAAGAGAATCTAGAAGCAATACACGCGGAGACGACCGGTATCGGCGAAATCGAAGCAGATCTGTGGGTCCAGAGTCCTGCCGTTCCAATTGATCCCTCCATCGAGCAGCCCCCCTGCGAAGCCGCCCCGGCGCCGCGCGAGTACGGCCCCGAGCTCGTGAGCCTCGACGAGTACCTGCCGCACATCCCGCCCCTGCTCACCATCAACAGCGCGCGCCTgcccgccccggccccgcccCTAGCCCCGCCCCTCGACAAGTGGGAGCCGCCTGTATTCACCAAGATGGCAGATCTGGCCTACGCGGATTTAGCGGAGGTGATGAACGcagatatattttaa
- Protein Sequence
- MAALSKWVPIEAATDQPQPHLKLTTIDKIGGIYCHICHSTIGNKKDYDAHYIKHETGSKDITYTCVVCRKDIVGYPSFRGHCYTNHVIKDKFKCNHCDKLFSKQTALLSHLDTMHQFKCSTCHNRFKSQKELTMHQIIHKKELTPPYNCQVCNKLIEDTNDCEQHLEDHSTTSYSCPICDEGIINIQDGAHHLAKHFGEVLTNYDESDSDENEFANDSSIDLLGGIFCSHCNKNFKARPEFDTHFVLEHEDKNIIYGCNICGKEYEKYLFFANHCYNHCTKDKFKCEVCFKRFPRLSLLVIHTETYHSGAGGGAAYPFTCQQCGLGLRTARRLRDHRRAEHNCSSECPQQGCGKIFNTPKELVLHLKEHSGGAWCRRCGLRFAAPSAALRHLPVHRTTLYACPVCGKAYGEKYLLMKHVTQHFSSVLHVCKICGRVYSHRHRLAQHLKVHAEAKAHACDTCGKGFAKRFLLKQHQNIHAGARPYRCTNCPKTFASVPNFKRHMKNMHNVTRIDNKLFIDEANNKNNTNNQENNVTPSSSVSESLDIPAEFDESNESCGWNLDQLDPQVMRMIEENLEAIHAETTGIGEIEADLWVQSPAVPIDPSIEQPPCEAAPAPREYGPELVSLDEYLPHIPPLLTINSARLPAPAPPLAPPLDKWEPPVFTKMADLAYADLAEVMNADIF
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01282634;
- 90% Identity
- -
- 80% Identity
- -