Paur028901.1
Basic Information
- Insect
- Pyrausta aurata
- Gene Symbol
- -
- Assembly
- GCA_963584085.1
- Location
- OY757281.1:4947165-4949528[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 21 4e-07 3.5e-05 24.8 2.5 1 23 8 31 8 31 0.95 2 21 0.0013 0.12 13.8 0.2 2 23 37 59 36 59 0.95 3 21 0.00011 0.0097 17.1 0.2 2 23 68 90 68 90 0.97 4 21 2.5e-06 0.00022 22.3 1.6 2 23 99 121 98 121 0.95 5 21 5.8e-06 0.0005 21.2 0.6 2 23 129 151 129 151 0.93 6 21 4.6e-06 0.0004 21.5 2.2 2 23 159 181 158 181 0.96 7 21 6e-07 5.1e-05 24.3 2.7 1 23 187 210 187 211 0.97 8 21 0.016 1.4 10.3 2.2 2 23 219 241 218 241 0.91 9 21 0.002 0.17 13.2 1.2 1 23 261 284 261 284 0.97 10 21 0.00069 0.059 14.7 0.9 1 23 312 335 312 335 0.97 11 21 0.16 14 7.2 1.3 2 21 343 362 342 363 0.94 12 21 0.013 1.1 10.7 1.5 3 23 373 394 372 394 0.95 13 21 0.001 0.088 14.1 6.4 1 23 418 441 418 441 0.97 14 21 1.5e-05 0.0013 19.9 0.8 2 23 448 470 447 470 0.96 15 21 3.5e-05 0.003 18.8 2.2 2 23 477 499 476 499 0.94 16 21 0.0081 0.7 11.3 2.2 1 23 505 528 505 528 0.97 17 21 0.096 8.2 7.9 5.0 2 23 536 558 536 558 0.95 18 21 3.6e-05 0.0031 18.7 0.2 1 23 565 588 565 588 0.97 19 21 0.018 1.6 10.2 2.6 1 22 595 616 595 618 0.89 20 21 0.019 1.6 10.2 2.7 3 23 633 654 632 654 0.91 21 21 0.15 13 7.3 0.2 1 17 704 720 704 721 0.90
Sequence Information
- Coding Sequence
- ATGTATCAAAACCTCCTCGACTTCGTCTGCGATTATTGTGGCCGCGCGTTCACCAGGAAATACAACCTCCAGACCCACATCGAGAACTGCCATCTTACATCATCATGCTACTGCGAAATTTGCGAACAAACATTCGGCAGCCCAGCTGGTTTACAGCTCCATCTCTCTCGAGGCCACAACAGATATGGACATTCGTCACCAGAATGTGATATATGCGGAAACATCTTTACGCGAAAACAGAACATCATATCCCATATGCTCACTGTTCATTTACAAGGAAATGGAACAAGCACTCGTTGTCAATTGTGCGACAAAGTATTTTCGACCGAACGGAATTTGAGAAGACACATCAATCAGTTCCATAACCCAGATGTTAAGCAGCCTACGTGTAACGAATGTAACAAAGTATTTAAAAGCAAGCACTCTTTGATCGCTCATATCGAGGCAGCACACATTACGGAGAAAGGTATTATCAAGTGTCATCTGTGCGAGAAAGTATACACGAATAATAGGAATTTGAAAAGACATATCGAGATGTATCATGGAGAAAAAGGAGAGTTCCGATGCGATGTATGCCCTAAAGTGTACACGTCAAATCAGAGCTTACGCAGACACATCAGAACTAGACATCACTCGGATGACGATGAAGAGTGTACGTGCGAATATTGTAACAAAGTCATATCTGGCAGAGAAAACTACAACAGCCACATATCATTCTTCCACAAACACGACACCAATTCAGTGGACTGCAGCGATGTTGTATCTTCCAAAACTCACGATTACATCTGTGTTTCCTGCTCAAACACTTTTGAAGATGAATCGCAGTTACGACATCATGTCAAAACCGAACATTCCTTCAAAGATTTCTACAAGTACTGCAAGAAATCCCTTCTAAAGCAAATAGGCAAACCTAAATCCCAGAAAATGGTATCTTACAACTGTGAATATTGTACCAACTCGTTTGGAAGCGTCTACGAGTTCAAAGACCACATGAGAATCAACCACGACAAAGAATACTCTCTCTCCACCTGCAATGTTTGTTTTAACAAATTCTACAGTAAAGAATCCATGTCGAAACACAGAAAGGTGTGCTTACCACCGCCAAATGTAAACCCTTGCAGCCATTGCGATAAGCTATTCACAGATATATCGAGTTTGGAGTTCCATACTCGTATCTTTCACCCGCAAGCTCAAATAGCGGATTCGAACATCACTTCAACAAACTTTGATGATTCGTTGGACAGCAACTCTTACAAATGCAAGCACTGCGACCGCGTCTACTACTCGGACAGGTCATTAAAACATCACATAAAGTTGAAACACACGACAGATGAAGCAATGCAGTGTGGGTACTGCGGGAAAATATGCAGCAACAAATATTATTTGGCTTCGCACATCAAAATCGTTCACAACAACGACTCTTGGTCCAAATGTGACTATTGCGATAAACAGTTTAAATCCAAGAGAAATATTCGGAGGCACATTGAGTATACTCATTTGGGTATGCAGCGGTATAAGTGTATCGAGTGTGAGACTCTGTTTAAAGAGAAGAGGAGCTTGCGAAAGCATGTGCGAACGAAGCACCCCAACTCGGCCATGTTTCCTCAGTGCCACATTTGCCAGAAGAGGTTTGAGTCGGCCAAATCTTGCAAGATACATTTGAAGCTTCTCCATTCTTTCAACATGAATACTTTCCCTTGCGACTTGTGCTCCGTTTCGTTTAGTTCGAAGGAGGCGTTGACGATTCATTTGCAAACGAAACATTTGGCTGAAGATGAGATCTACAAGTGCGAAGATTGCAACTTGGTCTTCAAAGGACAGGAGAAGTTTGACAAGCACAACGAACTGTGCCATGTAAACACTATGCCTGATATAAAGCAAAAGGTGTTACCGCGCTGCATTATTTGCATGAAGGATTTCAGCACaagaaaaactttaaaaagacaCATTAAGAAGTTCCACAATGAGTTTGATGTGGACGAGTTGGCGAATTTCGGTACCCGCCGACGCGTTTTCTACGTCGACTGCGATGAGTGTGTAAAGAAGTTTGGCGACGATTTTCACTTCAATTTGTACCAGAAGTTGAAGCATTTGAAGGAGTCGGTTATTTTCAAATGCGAAATTTGCTCAACGTCGTACAATTCTTTGGAGTATTTAATACAGCGGTATAGACTTACGAGCGATGATTCTGGGAAAGGGAAGATGATCTTGAGCGAGCTGTGCACAGCAGAAATGAGTGATGAGGAATCTTCGTACACTGGTTTTGGATCATTGCATGAAATGATGGAACCAGAAAGTACTACGACCGATGTCAAAATAGAGCCGATTGATGAGGATATAAAGATGGAGCCTGAGTCTCCGTAG
- Protein Sequence
- MYQNLLDFVCDYCGRAFTRKYNLQTHIENCHLTSSCYCEICEQTFGSPAGLQLHLSRGHNRYGHSSPECDICGNIFTRKQNIISHMLTVHLQGNGTSTRCQLCDKVFSTERNLRRHINQFHNPDVKQPTCNECNKVFKSKHSLIAHIEAAHITEKGIIKCHLCEKVYTNNRNLKRHIEMYHGEKGEFRCDVCPKVYTSNQSLRRHIRTRHHSDDDEECTCEYCNKVISGRENYNSHISFFHKHDTNSVDCSDVVSSKTHDYICVSCSNTFEDESQLRHHVKTEHSFKDFYKYCKKSLLKQIGKPKSQKMVSYNCEYCTNSFGSVYEFKDHMRINHDKEYSLSTCNVCFNKFYSKESMSKHRKVCLPPPNVNPCSHCDKLFTDISSLEFHTRIFHPQAQIADSNITSTNFDDSLDSNSYKCKHCDRVYYSDRSLKHHIKLKHTTDEAMQCGYCGKICSNKYYLASHIKIVHNNDSWSKCDYCDKQFKSKRNIRRHIEYTHLGMQRYKCIECETLFKEKRSLRKHVRTKHPNSAMFPQCHICQKRFESAKSCKIHLKLLHSFNMNTFPCDLCSVSFSSKEALTIHLQTKHLAEDEIYKCEDCNLVFKGQEKFDKHNELCHVNTMPDIKQKVLPRCIICMKDFSTRKTLKRHIKKFHNEFDVDELANFGTRRRVFYVDCDECVKKFGDDFHFNLYQKLKHLKESVIFKCEICSTSYNSLEYLIQRYRLTSDDSGKGKMILSELCTAEMSDEESSYTGFGSLHEMMEPESTTTDVKIEPIDEDIKMEPESP
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01279494;
- 90% Identity
- iTF_01279494;
- 80% Identity
- iTF_01279494;