Pful021913.1
Basic Information
- Insect
- Pycnomerus fuliginosus
- Gene Symbol
- -
- Assembly
- GCA_963924575.1
- Location
- OZ004622.1:6336797-6337941[-]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 0.16 1.1e+03 0.8 0.0 26 47 184 204 181 207 0.77 2 4 0.0025 17 6.5 0.0 24 48 208 232 204 235 0.88 3 4 0.0025 17 6.5 0.0 26 49 269 292 264 296 0.92 4 4 0.00038 2.6 9.1 0.1 21 48 321 348 312 351 0.91
Sequence Information
- Coding Sequence
- ATGACAACGCCTTCCCTTTATCAATGCCGTTTGTGCTTAAAAGACTCTCCGTTTTGCTATTCCCTCTTCGATGAAGACGTAATTGATATAATTGAAAGCTTTACCTCAATTAAGATCGAAGAGGACGACGAATTATCCTCAAACTGTTGTTCTCAATGCCTGGAAGATGTCTATTTGGTTCACAAGATCAGGTCTCGAATTATTGAGTGTGATCAAATCTTGAGGGAACGTATTAAGGAAGACCCCAATCCCTCACAAGACCCACCAGAACaacaaaaagttaaaattgAGGTCACAGAGCCTGAGCCTTGCCCCACTGAGAACAGTTTTCCAGAAATTGTACTAATAAAAAGCGAGGAAGAGGAACCAAAAGACTCTGCGAATGAATCCGCAATCACAATCAACCCAGAATTGAATGAGGTCTACAGGAAACAGATTgaaatgaagaaaaattcaaaaccagTGAAATTCGAGTGCACCGAATGCAACTTGCAGTTCGCATTTAAAAGTTACTACTTGCAGCATATGAAAAAGCACAAGGTCATCAGTGTTTGTGAAATTTGTGATAAACAAGTACTGTCTGTGAACTACAAGAAACACTTGGAAGTGCATAAGGGATCGCCGAAAGTGTGCGAATTGTGTGGGGCAGTGGCCAAAAACACGGAAAGTCTACGAGGACATATGTTCTATATGCACAAAAGTACAGCCGAGCAGTATAAATGTAAACACTGTGGGAGGTTCTACCGTTACAAGTACAAGTATGAGCTTCATGTGAGGAAGGCGCATGGGGGGAAAGGTACGCATATCTGCGAGGTTTGCGGGAAAGTGTTTTATACAGCTCGAGATGTAAATCGACACATTCAGATGACTCACATGAAGCTGAGGCCGTATATTTGTCAGTACTGCAATAAGGGGTTTAGTAGCTCGTATGCTAGGAGGACTCACGTGAGGCAGCATACCAACGAGAAGCCGTTTAAGTGTGAGGTTTGTGCTGAAGGGTTCCGACAGAAGGTTTCCTTGAAGACTCATTTGAAATCGAAACACGGAATTTTGTTGAAAGTTCCAAAGAATTCTGGTTATATAGCAGTAGTAGGTTga
- Protein Sequence
- MTTPSLYQCRLCLKDSPFCYSLFDEDVIDIIESFTSIKIEEDDELSSNCCSQCLEDVYLVHKIRSRIIECDQILRERIKEDPNPSQDPPEQQKVKIEVTEPEPCPTENSFPEIVLIKSEEEEPKDSANESAITINPELNEVYRKQIEMKKNSKPVKFECTECNLQFAFKSYYLQHMKKHKVISVCEICDKQVLSVNYKKHLEVHKGSPKVCELCGAVAKNTESLRGHMFYMHKSTAEQYKCKHCGRFYRYKYKYELHVRKAHGGKGTHICEVCGKVFYTARDVNRHIQMTHMKLRPYICQYCNKGFSSSYARRTHVRQHTNEKPFKCEVCAEGFRQKVSLKTHLKSKHGILLKVPKNSGYIAVVG
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01278524;
- 90% Identity
- iTF_01278524;
- 80% Identity
- iTF_01278524;