Pful029518.1
Basic Information
- Insect
- Pycnomerus fuliginosus
- Gene Symbol
- -
- Assembly
- GCA_963924575.1
- Location
- OZ004625.1:15094879-15095343[-]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 5 0.0061 42 5.3 0.1 21 44 6 29 1 33 0.85 2 5 0.0069 47 5.1 0.0 21 47 34 60 29 66 0.86 3 5 0.076 5.2e+02 1.8 0.1 21 45 62 86 57 92 0.75 4 5 0.0034 23 6.1 0.0 19 45 88 114 85 117 0.87 5 5 6.4e-05 0.44 11.6 0.7 21 45 118 142 115 146 0.91
Sequence Information
- Coding Sequence
- ATGCGCACGCACAGCGGCGAGCGCCCCCACATGTGCTCCGTCTGCGGCAAATCCTTCAGCCAATCAACGACGCTCATCTACCACATGCGCACGCACACAGGGGAGACCCCCTTCAAGTGCAAGCTCTGCAACAAGGGGTTCACCCACTCGGGCAACCTCAACACCCACATGAGGTTCCACAAGAACGAGCGCCCCTTTTCCTGCCACATGTGCGAGATGAGGTTCGTGACGTCATCGCACCTCACCCTGCACATCAAGAGGCACTTGGGGGAGAAGCCCCACAAGTGCAGGATCTGCGGTAAGGGGTTCGTCCGGAGTCAGTATTTGAAGGACCATTTGGTGATACACTCCGGGGAGCGGCCCCACTTGTGTCGCATTTGTTTCAAGAGGTACACGCAGAGCAGTCACTTGACGAGGCATATGAAGACGCATGTTCAGGAGGTTAAAGTAGAGGGGCAAGCTTAG
- Protein Sequence
- MRTHSGERPHMCSVCGKSFSQSTTLIYHMRTHTGETPFKCKLCNKGFTHSGNLNTHMRFHKNERPFSCHMCEMRFVTSSHLTLHIKRHLGEKPHKCRICGKGFVRSQYLKDHLVIHSGERPHLCRICFKRYTQSSHLTRHMKTHVQEVKVEGQA
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01278453;
- 90% Identity
- iTF_01278453;
- 80% Identity
- iTF_01278453;