Pful027350.1
Basic Information
- Insect
- Pycnomerus fuliginosus
- Gene Symbol
- -
- Assembly
- GCA_963924575.1
- Location
- OZ004624.1:10992540-10994580[-]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 6 0.012 79 4.4 0.1 20 44 181 205 175 213 0.85 2 6 6.3e-05 0.43 11.6 0.1 21 48 238 265 231 269 0.86 3 6 0.0036 24 6.0 0.0 22 45 267 290 262 299 0.83 4 6 0.21 1.5e+03 0.3 0.0 21 44 294 317 289 321 0.70 5 6 0.0091 62 4.7 0.1 21 47 322 348 317 355 0.85 6 6 0.0016 11 7.1 0.1 22 44 379 401 376 407 0.87
Sequence Information
- Coding Sequence
- ATGGAGGAGCTTCCACTGTTAAATATGAATGAAATCTGCCGTGTCTGCTTGTTGGAACGTGACCACATGTATTCCATTTACAGTGAACTCTACGAAGACCAAACCAACATAGGACTTGTCGATATCCCCTACATTTACGAAATTCTCTCAAGCATCTCTTCTATTAAAATTGAAGCGAACGACGGTTTGCCCTCTTTGATTTGCACGAAATGTATCGACATGGCCCACACCTCCTACAAGTTTCAAAAACAATGCAACCAGTCTCAAGTTATTTTAGATGCTTATCGTAAGCAGGGGGGTGGTGGTGGAAGGGTAAGCTCTCAAGTTACGACAAGCACAAGAGATGGCATGGGACTGCAATGGAGTGAATGTGATAATAATAGAATAGACCCCAATGACTTTTTAGTTGTGGAAAGTGGGAATATAAGAAGAGGTAATAAGGAAAATGCAAAGCAGGAAGTGAAAGTTGTCAAGGGTAAATCGGAAAATTTAGATAAAAAGGTTACATCAGAAATTAATGATACAGAAGTGACTGCAAGTAGTGTTGAAAAGgTCTTCCCTTGCAACATGTGTGAAAAAACATATAAACACTCAAGCAACCTGCGTGTTCACATGAGAAATCACTCGGAAGAAACACCATACCACTGTAAAACCTGTGGGAAAAGCTTCAAGCAATACGGTTCGTTGCTGTATCACAAAAGAGGCCATACGGGAGAACAGCCATATGCCTGTAAAATTTGCGGTAAACGATACAGACAATCTGGTACATTAACAGCTCATATGAGGGTACACACTGGTCAAAAACCGTTCTTATGCTCCATCTGCGGTCGAGGATTTAGACAATCAGCTGACTTGGGGTACCATATGAGATCTCATACGAAAGAAAAACCGTACATGTGTAATGTTTGCGGGAAGACAATGTCAATGCAGTCGCATTTGGTGCAACATATGAGGATACACACAGGGGAGAAACCTTACAAATGCACGGTGTGCGAAAAGGCTTTTCCATCTTCGACGAGTTTGAAGCGTCACGCAATTATTCACACCAGTTTGAAACCGTACTCTTGTGACGTCTGTTCCAAATCTTTCAACAGAATGAGTAGTCTAAAAGTACATGCGAAGATTCACACCGACGAAAGATCGCATATCTGCCCTATTTGTGGTAAAGGATTTATTCAGGCGCATGCTCTGCGATCGCATTTGCTGTCACATACGTCAGAGCTTTCCATGAAGTCAGCCCAGTATACGGTATAG
- Protein Sequence
- MEELPLLNMNEICRVCLLERDHMYSIYSELYEDQTNIGLVDIPYIYEILSSISSIKIEANDGLPSLICTKCIDMAHTSYKFQKQCNQSQVILDAYRKQGGGGGRVSSQVTTSTRDGMGLQWSECDNNRIDPNDFLVVESGNIRRGNKENAKQEVKVVKGKSENLDKKVTSEINDTEVTASSVEKVFPCNMCEKTYKHSSNLRVHMRNHSEETPYHCKTCGKSFKQYGSLLYHKRGHTGEQPYACKICGKRYRQSGTLTAHMRVHTGQKPFLCSICGRGFRQSADLGYHMRSHTKEKPYMCNVCGKTMSMQSHLVQHMRIHTGEKPYKCTVCEKAFPSSTSLKRHAIIHTSLKPYSCDVCSKSFNRMSSLKVHAKIHTDERSHICPICGKGFIQAHALRSHLLSHTSELSMKSAQYTV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01278389;
- 90% Identity
- iTF_01278389;
- 80% Identity
- iTF_01278389;