Pful015059.1
Basic Information
- Insect
- Pycnomerus fuliginosus
- Gene Symbol
- -
- Assembly
- GCA_963924575.1
- Location
- OZ004619.1:45717047-45721717[+]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 5 0.0048 33 5.6 0.0 21 48 6 32 2 36 0.87 2 5 0.0032 21 6.2 0.1 23 46 64 87 58 93 0.81 3 5 0.015 1e+02 4.0 0.1 21 43 90 112 83 117 0.85 4 5 0.00035 2.4 9.2 0.0 21 52 118 149 113 151 0.87 5 5 0.0016 11 7.1 0.0 21 44 146 169 144 176 0.90
Sequence Information
- Coding Sequence
- ATGCGCACCCACAACGGCGAAAAACCGTTTTTGTGCTCCACCTGTGGCAAGGGCTTCAACCAGTTGGGCAACCTGAGGCAGCACACCATCCGCCACAGCGGCGTTAAAGCGCACCTTTGCAGCACTTGCGGCCATGGTTTTGCCAGTAAAGGGGAGCTGTCAGCACATTTACGAAAGCACACAGGGGCCCGGCCCTTCGTCTGTCCGATCTGCAACCACGGCTTCACCACCTCAAGCTCCTTAACAAAACACAAACGCATCCACTCGGGGGAGAAGCCCTACGAATGCGACGTCTGCCACATGAAGTTCTCAAGGTCGGGCATATTGGCTAGGCACAAACGGACCCACACGGGGGAGAAGCCCTACGTGTGTAAATTCTGCACGAAAGCCTTCTCACAGTCCAACGACCTAACCTCACACTTGAGGATCCACACGGGGGAGAAGCCCTACATCTGCGACGCGTGCGGACAGGCCTTCAGGCAGAGCTCCGCCCTCAAGACGCACAAGAAGACCCACATAGACAGGAACAGCTTCGAGACCAAACCCGTGATAGGGGTGGTGCACGCGTGGACCGTGCAAACGCAGTCCATGGGCGTTTAG
- Protein Sequence
- MRTHNGEKPFLCSTCGKGFNQLGNLRQHTIRHSGVKAHLCSTCGHGFASKGELSAHLRKHTGARPFVCPICNHGFTTSSSLTKHKRIHSGEKPYECDVCHMKFSRSGILARHKRTHTGEKPYVCKFCTKAFSQSNDLTSHLRIHTGEKPYICDACGQAFRQSSALKTHKKTHIDRNSFETKPVIGVVHAWTVQTQSMGV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01278436;
- 90% Identity
- iTF_01278436;
- 80% Identity
- iTF_01278436;