Pcon010172.1
Basic Information
- Insect
- Ptychoptera contaminata
- Gene Symbol
- -
- Assembly
- GCA_963942525.1
- Location
- OZ012638.1:18208928-18210274[-]
Transcription Factor Domain
- TF Family
- zf-LITAF-like
- Domain
- zf-LITAF-like domain
- PFAM
- PF10601
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family display a conserved zinc ribbon structure [3] with the motif C-XX-C- separated from the more C-terminal HX-C(P)X-C-X4-G-R motif by a variable region of usually 25-30 (hydrophobic) residues. Although it belongs to one of the zinc finger's fold groups (zinc ribbon), this particular domain was first identified in LPS-induced tumour necrosis alpha factor (LITAF) which is produced in mammalian cells after being challenged with lipopolysaccharide (LPS)[2]. The hydrophobic region probably inserts into the membrane rather than traversing it. Such an insertion brings together the N- and C-terminal C-XX-C motifs to form a compact Zn2+-binding structure [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 5 1.7e+04 -4.3 1.2 60 66 8 14 4 23 0.48 2 4 5 1.7e+04 -4.6 0.9 59 62 188 191 182 193 0.58 3 4 1.3e-16 4.6e-13 49.0 4.0 3 70 257 324 255 324 0.93 4 4 1.2 3.9e+03 -2.0 0.5 55 64 343 352 338 355 0.68
Sequence Information
- Coding Sequence
- atggtGTTACGTGTTCGTTGTCTTTTATGTAGTAAAATATTAGAATGTCAACGTAACGACACAACATGTTTATTAGATCATATTAATTTGGAACATCCTAATGTTACATTATCTCGTATATCCAATAAGtttgatGAAACTGATTTACCGTTATTAGAATCTCAAACATCAGCAACAATGTCTGAAAATGTTGGTATTAAATCTCCAAGTAATGAAAGTTTACAAGAAGTTTTCCACTCAGCAGAGACggttaatcaaaatttagataatatctcagaaaaaaagaaaagcaattttagtagaataagtaataataataacaaaaataattgttacatCGATTGTGAGTgtcaattaaataagaaacattCTGTAACATCTAAATTATCAACAATACCGGAAACAGAGTCGACAGCCTCATCAAAATATCaatctaattataataataataataataataatagtaaaaaattcaattcctCAGTACAAGCACATACTGATGCGGAATTACAAGAGtttataaaaagtataattgCCAAGGAGAGTGCAAATATAAAATCGTGCACCTGTTGCTACATGGAAAATGGTAACAGTAGTCCAAATGGCCGTTTAACTAGTCATGATAAAATggaggaaaaaataattagcaatgaTAGTGAAACAAAGgtcttatataaaagaaaatataaaccgATGAAGCCAATTAAATTtggtaaaaacaataaacgaaAGTTATATAAAACGTCAGTTGAAAAATGGCGTCCAGGTAGCTCAAAGATCACATGTCCAGAATGTGGTGTAACCAGAAGACCGGTTATACGATCGCATGCTGAtcgggtGTCCCATTCATCTTTCGGCGCCGCATTAATTCTAACATGTTGGCCATTATGCTTTCTACCATGTTTGTTTCCACCGCCAACAACTGAATACTTGCATTGTTCGCAATGCAATCATTTTCTAGGGCAGTACAATCATAAAAGCAACAAAGTACAGCCGAATGAAGAGTCCCTTGGTGAGCTACCCAATTGTAGTGAATCGTGTGAAGGCTGTAAGCAGTTTAAAAGCGATAATGATTCACTCCAAGCAGAAAGTCAATTCAAATcggaatga
- Protein Sequence
- MVLRVRCLLCSKILECQRNDTTCLLDHINLEHPNVTLSRISNKFDETDLPLLESQTSATMSENVGIKSPSNESLQEVFHSAETVNQNLDNISEKKKSNFSRISNNNNKNNCYIDCECQLNKKHSVTSKLSTIPETESTASSKYQSNYNNNNNNNSKKFNSSVQAHTDAELQEFIKSIIAKESANIKSCTCCYMENGNSSPNGRLTSHDKMEEKIISNDSETKVLYKRKYKPMKPIKFGKNNKRKLYKTSVEKWRPGSSKITCPECGVTRRPVIRSHADRVSHSSFGAALILTCWPLCFLPCLFPPPTTEYLHCSQCNHFLGQYNHKSNKVQPNEESLGELPNCSESCEGCKQFKSDNDSLQAESQFKSE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -