Pcon002987.1
Basic Information
- Insect
- Ptychoptera contaminata
- Gene Symbol
- -
- Assembly
- GCA_963942525.1
- Location
- OZ012636.1:22134634-22135797[+]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 9 0.0064 18 5.5 0.0 25 50 72 97 60 100 0.85 2 9 0.11 3.2e+02 1.5 0.2 17 31 93 107 92 121 0.79 3 9 0.012 34 4.6 0.4 20 44 124 148 114 152 0.83 4 9 0.00025 0.71 10.0 0.0 21 47 153 179 149 185 0.89 5 9 0.5 1.4e+03 -0.6 0.0 22 45 182 205 179 208 0.85 6 9 0.067 1.9e+02 2.2 0.1 21 44 209 232 205 242 0.85 7 9 0.022 61 3.8 0.0 21 43 265 287 257 292 0.87 8 9 0.15 4.1e+02 1.1 0.0 21 45 293 317 289 320 0.87 9 9 1.7e-05 0.048 13.7 0.5 21 48 321 348 317 350 0.94
Sequence Information
- Coding Sequence
- ATGGAAATAGAGAATTCAGCTTTGTTACCAAATTTAAATGAAGTTGTGCCTAATGAGGAAATGAATATCTTTATAAAAGTAGAGCCAAACATAATGTTTAATCAATGTGGCAATATTAATACAACGTTTCCTGAAGAAAAAGAATCAGAAACACTTGAAAATGCATATGCCGATTATGAAGTAAAAGAGTCTACTTGTAAAGAAGATGACAGATTTGAGTGCCCTTTATGTATGGAGAAACTTCCgcaactaaatttattaaaaaaacatttgcaAAGTAATCATGAAGCAGAAGGTCCGTACCATTGCCCACTGTGTGACATTAAAGTAGATGCTTTAGATGAGTATGTACGGCATAGAAAAAATCACTCACGAAAAAAACCTGTTACTTGCCAAGAGTGTCATCATGAGTTTTTTGATTCGTATTGCCTTAAGCGACATATGCGAACGCACACGGGTGAGAAACCTTTTGAATGCCCAGAATGTAAGAAATCGTTTCGAACATCAGGAAATCttagtattcatttaaaaatccaTGCTGGTGAACGACCGTATGAGTGCAATCTTTGCACCatgcgatttttattttcaagcaAACTTAAAACTCATATGAATACTCATACAGGGGAACGACCATATAAATGTTCCATTTGCAACAAAACGTTTGGTGATCGCAGTACTTTAAATCGGCATAAAAAGACTCATACAGGTGAGCGACCCCATAAATGTATAACCTgcgataaaagttttattgctGCTACTGATTTGACATCACATCAGCGTATTCATACTGGCGAGAAACCATTTCTTTGTTCTATGTGCGGTAAAAAATTTGGTGATTCCAGAAATCTTTATCTGCACAAAAGAGTGCACACTGGGGAGCAGCGCTTTAAATGTGATTTGTGCAACAAACATTTTATCAGTTCGAGCAACTTAACTACACATATGCGAATACATACCGGAGAAAAACCTTATAAATGTCAATACTGTAATGATGCCTTTCGGGATTCGACGAACTTAAAGCGACATAAGCAACGACGGCATCCTGAAGTGTTGATTACTGTTGTTCCAGAGCAACTTAATGATGAGCTTCAATTGCAAACTTCTGCACATCATATACAACTACAATTGTTGTTGCCAGAAGCAAATATTCCGTTAAGCTGA
- Protein Sequence
- MEIENSALLPNLNEVVPNEEMNIFIKVEPNIMFNQCGNINTTFPEEKESETLENAYADYEVKESTCKEDDRFECPLCMEKLPQLNLLKKHLQSNHEAEGPYHCPLCDIKVDALDEYVRHRKNHSRKKPVTCQECHHEFFDSYCLKRHMRTHTGEKPFECPECKKSFRTSGNLSIHLKIHAGERPYECNLCTMRFLFSSKLKTHMNTHTGERPYKCSICNKTFGDRSTLNRHKKTHTGERPHKCITCDKSFIAATDLTSHQRIHTGEKPFLCSMCGKKFGDSRNLYLHKRVHTGEQRFKCDLCNKHFISSSNLTTHMRIHTGEKPYKCQYCNDAFRDSTNLKRHKQRRHPEVLITVVPEQLNDELQLQTSAHHIQLQLLLPEANIPLS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01277138;
- 90% Identity
- iTF_01277138;
- 80% Identity
- iTF_01277138;