Basic Information

Insect: Ptychoptera contaminata
Gene Symbol: MBD-R2
Assembly: GCA_963942525.1
Location: OZ012639.1:15740672-15744983[-]

Transcription Factor Domain

TF Family: MBD
Domain: MBD domain
PFAM: PF01429
TF Group: Unclassified Structure
Description: The Methyl-CpG binding domain (MBD) binds to DNA that contains one or more symmetrically methylated CpGs [2]. DNA methylation in animals is associated with alterations in chromatin structure and silencing of gene expression. MBD has negligible non-specific affinity for DNA. In vitro foot-printing with MeCP2 showed the MBD can protect a 12 nucleotide region surrounding a methyl CpG pair [2]. MBDs are found in several Methyl-CpG binding proteins and also DNA demethylase [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 1 1.2e-17 2.9e-14 52.3 0.1 4 74 382 453 379 455 0.88

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	1	1.2e-17	2.9e-14	52.3	0.1	4	74	382	453	379	455	0.88

Sequence Information

Coding Sequence: atgggCAGACGCAAATGTTGTGTTGTTGGTTGTCGCTCGTCTGCTTTACGTGTCGAAGACCGTGGTGTAACTTTTCataaatttccattaaataataaaacgcgtAATGAATGGTTAAAAGAATGTCATATGCCAGAAAGTTTCAACATAACCAAAAGTTCATTTGTATGCTCACGGCATTTCACCAAAACAGATTTTCAAGCGTATAAAggtgtaaaatatttactaaaaaatggTGTTGTTCCAAGTATATTTCAATGGTCAACTTTGCAGGCTGATAAAATTAACACTAATGCAACCCTTAAAGATACACCGACTGCTGGCACTTCTGcagTTAAAAGATCAGCAAGTGCGGAAGAAGGAAGTTCTTTGGTAGAAcctcaaaagaaaataagcagGAAAACATCCGATTCGGCCATTATAGTACATTCTTCACCAGAAAAATTGCcaaagaaacattttaatgagtcatttaaaaaatcaacaagtgAAGGAATTAATTTCGCACCAGGAACAAAGCTTGAAGCACaagattttaatgaaatttggcATTTAGCTAAAATAATGGAAGTGGACAACGATGAACGAGaagttttaatacattttgaaaaaaaaggtGATGAAAAAACACCTGGTATATTCAATGAATGGATTCCTATGGACAGTAGTCGCCTTCGACCACAATGttatgcaaataatttaaatattaaaacatcaaTTCCAAAAGTAATATCACCAAAAACTATATCTTCAAATGGTAATGGCTTTGTAGTTGGACAAAAAGGTCTAGCACGCTGGAATGATTCTCGTAGATTCCCtggaacaataaaaaaagttctAGATAACgatACATACGAATTTATGTTTGATGAtggttttgtaaaattattaaaagggtGCCATAtaacaaaacttaaaaaagCAGGACGCAAAAAAGTAATACCAATAGTAGCACCGACACCcaaagaattaaacaaatctgACGTAATTACAAATGTAAATATCGTTGAAATCGCAGATGATGAAACTAACTTAACATTAAGAAAGGAATTACCGGAAATACCAAAAGATGGAACGTGGTGTTGTCATTGGTTAAACGATACTCCATTAGGCGAAAATAATATGATTGATGGGTATAATACAGTTGTTGTAAATGATTGGCGATTACCAAATGGTTTTGTAAAGCATTTGTATAATCgtacaataacaacaaatgtATTAAAGAAATGGGAAATTATCTTTGTAACACCAACTGGTCAAAAATTGAGGAATAAACAAGAGGTGAAACaatatttagataataataaagaaaaatatgataTTGATATATTTGATTTTGGAATACATAAAAGACGTGCAAAAGAGCTTGGCTTCTGTAATTATACACCGGAtttcaaacaaaaaccattaaatataTCTAGAGAATTTGGCTCaccaataatgcaaaaaactataaaacaagaaatatcaTCACCTATGGTTAAAACAGACGATAGTTTAATAGGACATGATCAAGAACTAGAAGAAGGATATGTATTTGTCGGTTCTTTAAAAGtacaaattattgataatcttTTCCGTTGTCCTCAAGATGGTTGTTTTAAAAACTTTcgtaaagaaaatcatttacaaattcatataaaacattatcatAAGGATATGGcaaaATTATTAGGGGTTTGCCCTAAAATGAGTGATTTAGCATATATAAGAACTATGGGCCATAATATAGACGATTCAGTTgctaaaaatcattttccaaATTCGCAATTTTTCGAAAAAGCGCATCAATTAGATCTACAATCCCGTATTCATCGTAAATCATTAACATCGCCAAACAGTAACATAAAGATagaaaatttagataataataaaatgcaagaTGAAATAATTAGTGCAGAAACAtctataaatgataaaataccaGACATAGAtagtgttaaaataaaaattgaacaatCTGATGATgagtcaaagaaaaaaattataatacaagaGGAAACAACAAATAGTATATGCACATTCGATAaagttgatttaaaaattgagCAAAGTACAAATAGTATTAGTGATGGAGAATTCGATAACAAAGAATTATCAGAAAATGCTATTAAATTGACTGATGAAAATAAACCACACATGCTACTTACATCCACAccatgcaataaaaaatatgtcgaTGATGAGTTGATCGATCcagaaacattaataaaatcccactctgttaataaaattaaatttaaacaacgaaatttaatgaaaaaacgtaaattaaatattaagcgACTGGGACGCCCACCATTAAATAGGAGTAAAATAATGACAGATGATCcaagtgatttaattaaaactgagccgaataattcatttatttgtaatgAAGAAACAAGAGATTCATTTATACAATATCCAGATAGAATTAAGAAATCAACAATTGaacaatttaatgaaaatacaaatagTTTAACAACAACGACTACCACTATTGAACGAAGTTTAAGccctaaatatataaatgaaggtggcgaaataataaaaatagtgcgGATGCGACAGgaggaaattattaattgtttatgtgGTTATACTGAAGAGGATGGTCTTATGATACAATGCGAATTGTGTTTATGCTGGCAACATGGTGCATGCAATGGTATTGAAAAAGAATGTCAAGTGCCAGAGAAATATGTTTGTTACATTTGTCGCAATCCCCAACGTGGCCGTTTATCTATGAAATATATTCATGATCAGGATTGGCTTTATGAAGgTAAACTACCCGTTGCCAATTATCATGTCATTAATCCTTATTTAAATGAacgttttgatttattaaaacagtCACATATTTTAACTGatcatccaaaaatgtatttatggtCGAAGAAATGGGAATTAAGTCCACAGCGCAATGATATcggcaataataaaataaaacatgaagACCAAATAACTTCATCAAAAGATGTAGCAACAGTGGCTAATGatttagatataaaaaataatataattattgatgatgttattaaaaataatgatgaatTAGTTCAAATATTAGAAGGCAATgataataagaatataaatgaCAGTTTTAATGACGATGATATAGTAACTACTACAATtataacaacagaaaataaagaagattcaacaatgataaataaaaatgatgtaaTTGATACAAATGagACAATAACATCATCGGaaacaaaaagcataaatataaatgatggaATTAATAGCTTTGTAAAAAATGAACTaactgataatgataataatattattaatccaataataaatgaatcattggctgataataaaattgttattaatgaaaatgtacCGCATGTTCCGCAACCAGAAGCGCCAATTGATTCTTTGGAATGTCAATCACGTTTGTTGGAGCATATTCAAAAACAACAGACAATGGCAATGTCTCGGTTGCAAACAATTGAATCACAAATAAGTGcATTGGAATCAATGGACAATATAACATCAGGCTATGTATATGAAACAActgaaacattaaatataaagttaaaatctacaattaaaatgttaatcaaagatttattaactattaaaaaattatcatatataaacaataactTGACAATATTGaatgaaacaacaaaaacggTGGTATCGCCATCATCAACACCGCCAACCGCGTCAGCGACcacatttaataatcaatacacagattttataaataattcatcaacaacaatactATGA
Protein Sequence: MGRRKCCVVGCRSSALRVEDRGVTFHKFPLNNKTRNEWLKECHMPESFNITKSSFVCSRHFTKTDFQAYKGVKYLLKNGVVPSIFQWSTLQADKINTNATLKDTPTAGTSAVKRSASAEEGSSLVEPQKKISRKTSDSAIIVHSSPEKLPKKHFNESFKKSTSEGINFAPGTKLEAQDFNEIWHLAKIMEVDNDEREVLIHFEKKGDEKTPGIFNEWIPMDSSRLRPQCYANNLNIKTSIPKVISPKTISSNGNGFVVGQKGLARWNDSRRFPGTIKKVLDNDTYEFMFDDGFVKLLKGCHITKLKKAGRKKVIPIVAPTPKELNKSDVITNVNIVEIADDETNLTLRKELPEIPKDGTWCCHWLNDTPLGENNMIDGYNTVVVNDWRLPNGFVKHLYNRTITTNVLKKWEIIFVTPTGQKLRNKQEVKQYLDNNKEKYDIDIFDFGIHKRRAKELGFCNYTPDFKQKPLNISREFGSPIMQKTIKQEISSPMVKTDDSLIGHDQELEEGYVFVGSLKVQIIDNLFRCPQDGCFKNFRKENHLQIHIKHYHKDMAKLLGVCPKMSDLAYIRTMGHNIDDSVAKNHFPNSQFFEKAHQLDLQSRIHRKSLTSPNSNIKIENLDNNKMQDEIISAETSINDKIPDIDSVKIKIEQSDDESKKKIIIQEETTNSICTFDKVDLKIEQSTNSISDGEFDNKELSENAIKLTDENKPHMLLTSTPCNKKYVDDELIDPETLIKSHSVNKIKFKQRNLMKKRKLNIKRLGRPPLNRSKIMTDDPSDLIKTEPNNSFICNEETRDSFIQYPDRIKKSTIEQFNENTNSLTTTTTTIERSLSPKYINEGGEIIKIVRMRQEEIINCLCGYTEEDGLMIQCELCLCWQHGACNGIEKECQVPEKYVCYICRNPQRGRLSMKYIHDQDWLYEGKLPVANYHVINPYLNERFDLLKQSHILTDHPKMYLWSKKWELSPQRNDIGNNKIKHEDQITSSKDVATVANDLDIKNNIIIDDVIKNNDELVQILEGNDNKNINDSFNDDDIVTTTIITTENKEDSTMINKNDVIDTNETITSSETKSININDGINSFVKNELTDNDNNIINPIINESLADNKIVINENVPHVPQPEAPIDSLECQSRLLEHIQKQQTMAMSRLQTIESQISALESMDNITSGYVYETTETLNIKLKSTIKMLIKDLLTIKKLSYINNNLTILNETTKTVVSPSSTPPTASATTFNNQYTDFINNSSTTIL

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01276990;
90% Identity: iTF_01276990;
80% Identity: iTF_01276990;