Pcon006031.1
Basic Information
- Insect
- Ptychoptera contaminata
- Gene Symbol
- Lrrfip2
- Assembly
- GCA_963942525.1
- Location
- OZ012637.1:10664170-10667764[+]
Transcription Factor Domain
- TF Family
- LRRFIP
- Domain
- LRRFIP domain
- PFAM
- PF09738
- TF Group
- Unclassified Structure
- Description
- LRRFIP1 is a transcriptional repressor which preferentially binds to the GC-rich consensus sequence (5'- AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA [1]. LRRFIP2 may function as activator of the canonical Wnt signalling pathway, in association with DVL3, upstream of CTNNB1/beta-catenin [2].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 1.6e-110 2.8e-106 355.1 32.0 1 299 231 520 231 521 0.94 2 2 0.19 3.2e+03 -3.0 5.1 7 27 553 575 527 594 0.50
Sequence Information
- Coding Sequence
- ATGGATACAATGGATTTACAAGTATTTAGTAACAATAGTAATAGTAATTTgactgataataatttaataaaacaatcaaagcaatgtgataataataatgatgtttTAAATGAAGAATTCGACTTTAGTGATGatgttttaaatgatttaaatagtgatgataatgatgatgctgATATTGATCATGATACAGTTGATTATAGTCACaatgatagtaataataataatataaatttattaattgttaataataaaataaataatattgaattaagtgattttccaataaatcattatgatcataatagcaataatgataatttaatttataagaataataataataatagtaataatgataatgataataataatgataaaattgaaagtgttaataatattttaataaataatataaatataaagaattttcttaataaatcaaattgtgATGAAAACTATCAATATgataacgataataaaaatacaaagttattaactattaataacaataataatgttgagAATAATGATTCAATTAATGGTGATattgatgataatttattaataagtaatcatcatcatcatcataatcttCATTCGCATCAtcttcataataattatgatgattTTAATAGTACAGAAGAAGATGaagttattgttaattatcttGGAAAATCTAATGAAATTgCTGAGGCACGATTAGCAGCCAGACGTCAAGCTCGTGCTGAGGCACGGGAGATTCGTATGCGCGAACTGGAGCGCCAACAAAAAGAACAAGAACAAAATGCTGATAGAGTATTCGATATGCAATCAGCATCTGGTATTGATCCTTTGGCCCGTTCTAGAATTGCTTTATCATCGACAACTGGTTCAGCGGCGATTCGTGGAAATAGTTCAATGTCGTCAAGACGCAGCAGTGAGGATTCCTTGGAGGAGGAAGGCAGAAGCTTACGTGATATTCGACATGAGCTTaagGATGTTGAAGAACGTTTCCGTAAAGCCATGATAGCAAATGCCCAATTAGATAATGAACGTGGCTCACAGTCATATCAAATACAATTATTGAAAGATAAATTAGAGGAAATGGAGGAAGCACATTCGCAATTGCAACGTGAATTCAGGGATAAATGTCGTGATCATGATGCATTAAAACGTAACAATGATAAACTAACAGAAGAATTACGTTTGGTGCAGGGACAATTAAATGAACGGGACACATTAATACATGATCAGGGATTAGTTATTGTGCTGGTCGAAGAGGAAAATGGTACAGATGCTCGTCGTGCACTAGTCAGTGTTGAAAATGCACAATTATTAGGTTCTGTACAAGGCTCATTAGATGTACGACTAAAGAAATTCGCTGAAGAGAAACATCAAATGCAAAATGAGATAAAAACCTTACAACAGCAATTAGCCGATGCAAAAACCCAAGGTCGTAGATCTGGTTCTGTTAATGGACCATTAGGCGATGATGACTATGAGGATGCTCAAAgagaagcaaataaattaatagctgattataaatataaattacaaaaaactgAACAAGAATTAGCTAGTTTACAGGCGAGTCTAGCCAGATCAGAAACACAAGTGATACGTTATAAAAGTACTGCCGAGGCGGCTGAAAAAGCTGAAGcggaattaaaaattgaacgaAGAAAGTTACAACGCgagaatcgTGAAGCAATGGAACGTATGGAAGAATTGGAAACAgctaataatcatttattaaaacgttTTGATAAACTTAAAAATGCCAAAAGTGCATTATTAAAAGATCTTTGA
- Protein Sequence
- MDTMDLQVFSNNSNSNLTDNNLIKQSKQCDNNNDVLNEEFDFSDDVLNDLNSDDNDDADIDHDTVDYSHNDSNNNNINLLIVNNKINNIELSDFPINHYDHNSNNDNLIYKNNNNNSNNDNDNNNDKIESVNNILINNINIKNFLNKSNCDENYQYDNDNKNTKLLTINNNNNVENNDSINGDIDDNLLISNHHHHHNLHSHHLHNNYDDFNSTEEDEVIVNYLGKSNEIAEARLAARRQARAEAREIRMRELERQQKEQEQNADRVFDMQSASGIDPLARSRIALSSTTGSAAIRGNSSMSSRRSSEDSLEEEGRSLRDIRHELKDVEERFRKAMIANAQLDNERGSQSYQIQLLKDKLEEMEEAHSQLQREFRDKCRDHDALKRNNDKLTEELRLVQGQLNERDTLIHDQGLVIVLVEEENGTDARRALVSVENAQLLGSVQGSLDVRLKKFAEEKHQMQNEIKTLQQQLADAKTQGRRSGSVNGPLGDDDYEDAQREANKLIADYKYKLQKTEQELASLQASLARSETQVIRYKSTAEAAEKAEAELKIERRKLQRENREAMERMEELETANNHLLKRFDKLKNAKSALLKDL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -