Pcon009164.1
Basic Information
- Insect
- Ptychoptera contaminata
- Gene Symbol
- -
- Assembly
- GCA_963942525.1
- Location
- OZ012638.1:3462709-3464055[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 5.3e-08 9.9e-05 21.9 0.0 5 40 250 285 247 288 0.91 2 4 5.2e-10 9.8e-07 28.3 0.0 4 35 299 330 297 336 0.90 3 4 2.9e-05 0.054 13.1 0.0 8 35 352 378 350 386 0.90 4 4 3.4e-10 6.4e-07 28.9 0.0 3 38 406 440 405 445 0.91
Sequence Information
- Coding Sequence
- atgatggaaaataacatttgtgaaaataataatacaaaaatattaaaatggaaGAAATTTGATGaacatttaattgaattaaataatgtgcTTTGGGtagaaaatcaatattttgatGTTATTATCGTGACACGAGATGGAATCGAAATAAAAGCCCACAAGTTATTACTTTCTACTGCCAGTGACTTTTTAAGAGATATCTTTTTGAGTAGCAAAAATATCGATGGtataacaaaaatagtaaTTCCAGATGCAAGTCATTTTATGATGGAGACACTGCTGCAATTTATTTACACCGGAGAAGTATCATTagacaaaacaaatattacaaatttttttgatttgtgtGATATGCTaagaataaaaagtttttatgatttaaataagatGAATAACGAGGAATTAAATTATGAGTCAAATGAATATGAAAATGAATCCATATTTCTGTATGACCCTTTAAATGCAGCaacaattgataaaataattgtaaatgaagaagaaatttCAAAaggtaataatgatgatgatgtaagTTACGTGGAAATTATATGCAATAATGAGGAAGAAAAGGATTATGACAACATTGAACTGGtttcattgaataataatgatgttACAAATAATTCGATAAATAGTGTATCATTGAAAGATGATAATGGAGATGGCAATGAAAATAGTGTGACTACAGTATCTCATAGTAAACATAAAGTGCAATCTGCTAGGATGAAAACGTACGATGCAAATATACTCGCAAAAGCAtttgatgaaataaaatcagGAACTGCATTAAGAGaagtagcaaaaaaatataatataccgCAATCCTCGCTTTACATGAAATATAAACGAACATCCCTTAGTCCGGAAAAACCAGCACGGCCACCTTACAGAAATCAAATTAAAGACGCAGTTGACGCAGTGCTTACAGGagaattaacattacaaaaagcGAGTAAAAACTTCAAAGTACCAAAAACTGTTTTGTGGCGAAAGTTGCATAAGTCACAATTATATAAACCAGAGAAATATGTAATGGCACCTGCTAGAATTGATGCAATTGAAGCATTGATGTCAGGCGAAAGTCTTATTTATGCgtcacaaaaatataaaataccaatATCAACATTATATAGAGATAAAGtaagattatataaaaatggtcAATTACcggaaaattcaaaaataaaaacacgagAAACTGgaaaagaatttaaagaaCGTGTACAGAAAGCAGTAGAAGCTTGCAAAGAAGGAATGTCGCAGAATGCCGcatcgttttattttagtgTTCCAAAAACTACTGTTTGGCGATAtatgaaattagaaaaaaaaaaattagaatcttaa
- Protein Sequence
- MMENNICENNNTKILKWKKFDEHLIELNNVLWVENQYFDVIIVTRDGIEIKAHKLLLSTASDFLRDIFLSSKNIDGITKIVIPDASHFMMETLLQFIYTGEVSLDKTNITNFFDLCDMLRIKSFYDLNKMNNEELNYESNEYENESIFLYDPLNAATIDKIIVNEEEISKGNNDDDVSYVEIICNNEEEKDYDNIELVSLNNNDVTNNSINSVSLKDDNGDGNENSVTTVSHSKHKVQSARMKTYDANILAKAFDEIKSGTALREVAKKYNIPQSSLYMKYKRTSLSPEKPARPPYRNQIKDAVDAVLTGELTLQKASKNFKVPKTVLWRKLHKSQLYKPEKYVMAPARIDAIEALMSGESLIYASQKYKIPISTLYRDKVRLYKNGQLPENSKIKTRETGKEFKERVQKAVEACKEGMSQNAASFYFSVPKTTVWRYMKLEKKKLES
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01276191;
- 90% Identity
- iTF_01277071;
- 80% Identity
- iTF_01277071;