Palb008630.1
Basic Information
- Insect
- Ptychoptera albimana
- Gene Symbol
- klhl21
- Assembly
- GCA_961205885.1
- Location
- OY540804.1:11990770-11992104[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 7.1e-06 0.013 14.9 0.0 5 38 246 279 244 283 0.81 2 4 2.1e-10 3.7e-07 29.4 0.0 4 35 295 326 293 332 0.91 3 4 2.2e-05 0.039 13.3 0.0 8 35 348 374 343 382 0.89 4 4 9.4e-10 1.7e-06 27.3 0.0 3 38 402 436 401 442 0.89
Sequence Information
- Coding Sequence
- atggaaaataatactaacgaaaataataatttaaagatgttaaaatggaaaaaatttgACGATCATTTGAttgaatcaaataatttactttgggtagaaaatcaattttatgatgttattattgttacgcGTGATGGAATTGAAGTAAAAGCACACAAATTATTACTTTCCACTGCCAGTGACTTTTTACGAGATATGTTTTTGAATAGCAAAACTTTTGAGGATATTACAAAAATAGTAATTCCAGATGCTAATCATTTAATGATGGAGACATtgcttcaatttatttacaccGGTGAAGTATCAttagataaaacaaatatcaCAGGCTTTTTTGATCTTTGTgatatgttaaaaattaaaagtttcgaTGATTTTAATAAGTTAAATAATGAAGATATAAATTGTGATTCGATTGAATATGAAAATGATTCCGTTTTTATGTATGATTCTTTAAATGAAGcagcaattaataaaataatattaaatgaagaTGAATTGTCAAAAGCTGGTGATGACGAAGTAAATTATGTGGAAATAATATGCAATAATGAGGACGTGAAAGAAGACTATGGCAATATCGAATTTgtaactttaaataataatgacttAACAAATAATACTTCTAATAGTGATGAATCCTTAAAAGATGATAATGAAGACTTTAATGAAACTAGTGAGACTAATATTGTACACAGTAAACCTGCGCGGATTAAAACTTATGATGCAAATATCCTGGCCAAGGCGTTTGAAGAAATTAAACTAGGAACTCCATTAAGAGAAGTAGCCAAGAAATTCAATATACCACAGTCTTCCCTATATATGAAATATAAACGAATCTCTGTAAATCCCGAAAAACCTTCGAGGCCaccatatagaaatcaaatcaATGACGCTGTTGATGCAGTGTTAACAGGAAAATTAACATTACAGAAAGCAAGTAAAAACTTTAGAGTGCCTAAAACGGTTTTATGGCGAAAACTCCATAAATCTCAATTATATAAACCAGAAAAATATGTAATGGCACCTGAAAGAATTGATGCAATTGAAGCATTAATGTCAGGCGaaagtttaatttatgcttctcaaaaatataaaataccaaTATCAACACTATATAGAGACAAGGTAAGACTATATAAGAATGGTCAATTACCAGAGAATTCTAAAATAAAGACACGAGAAACGGGAAAGGAATTTAAGGAACGTGTTCAGAAAGCAGTTGAAGCTTGCAAAGAAGGAATGTCGCAAAATGCagcttcttttaattttagtgtTCCAAAAACTACAGTATGGCGTTATATGAagttagaaaaatataaaatggaatcttga
- Protein Sequence
- MENNTNENNNLKMLKWKKFDDHLIESNNLLWVENQFYDVIIVTRDGIEVKAHKLLLSTASDFLRDMFLNSKTFEDITKIVIPDANHLMMETLLQFIYTGEVSLDKTNITGFFDLCDMLKIKSFDDFNKLNNEDINCDSIEYENDSVFMYDSLNEAAINKIILNEDELSKAGDDEVNYVEIICNNEDVKEDYGNIEFVTLNNNDLTNNTSNSDESLKDDNEDFNETSETNIVHSKPARIKTYDANILAKAFEEIKLGTPLREVAKKFNIPQSSLYMKYKRISVNPEKPSRPPYRNQINDAVDAVLTGKLTLQKASKNFRVPKTVLWRKLHKSQLYKPEKYVMAPERIDAIEALMSGESLIYASQKYKIPISTLYRDKVRLYKNGQLPENSKIKTRETGKEFKERVQKAVEACKEGMSQNAASFNFSVPKTTVWRYMKLEKYKMES
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01276376; iTF_01276884; iTF_01277071;
- 90% Identity
- iTF_01276376;
- 80% Identity
- iTF_01276376;