Palb005082.1
Basic Information
- Insect
- Ptychoptera albimana
- Gene Symbol
- -
- Assembly
- GCA_961205885.1
- Location
- OY540802.1:37302460-37303056[-]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 0.072 1.3e+02 2.5 0.1 26 47 12 33 3 40 0.82 2 4 0.00041 0.73 9.7 0.1 25 52 82 109 68 110 0.85 3 4 0.0015 2.7 7.9 0.0 21 44 106 129 103 138 0.89 4 4 0.0034 6 6.8 0.0 21 43 162 184 157 190 0.89
Sequence Information
- Coding Sequence
- ATGCATATAAGGCATAGTGAAATAAGGGCATTTCTATGcgaaatatgtaataaaggATTTAAACAAAAGCAGAGTTTATATTATCATAaagaaatacataaaaaagcaTTAAGCACACCAAAAGTGAGCAATTATATTCCAGATCAAAAattcaaagaatttttatgtaattatggtgacagaaaaacaagaaaattagcAACTAATCAGTATCGCATAACAACAAATACcggtgaaaatttatttgaatgtcCCGTGTGTTCATTGAAATTTACTCAAAAACAATCATTGAAAAGACACATGCTGTTACACACAGATGAAAAACCACACAAATGCGAAGTATGTGATATGGCATTTAGTCAAATAGGTAATTTAAATCGTCATAAATTAGTGCACACAGGTGGAAGGCCACACAAATGTAATTTCTGTAGTAAATCATTTTCTGCCCGCGATGGACTAATTACTCATATGAGAATACATACGGGTGAAACGCCATATCATTGTActatttgtgataaaaaattccatGCAGCTGGTAATTTAAAACGACATCAATTAGTTCACACGAAGAATCAAGATGatttaagcaataaataa
- Protein Sequence
- MHIRHSEIRAFLCEICNKGFKQKQSLYYHKEIHKKALSTPKVSNYIPDQKFKEFLCNYGDRKTRKLATNQYRITTNTGENLFECPVCSLKFTQKQSLKRHMLLHTDEKPHKCEVCDMAFSQIGNLNRHKLVHTGGRPHKCNFCSKSFSARDGLITHMRIHTGETPYHCTICDKKFHAAGNLKRHQLVHTKNQDDLSNK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01276488;
- 90% Identity
- iTF_01276488;
- 80% Identity
- iTF_01276488;