Palb008313.1
Basic Information
- Insect
- Ptychoptera albimana
- Gene Symbol
- Aef1
- Assembly
- GCA_961205885.1
- Location
- OY540804.1:7117571-7117966[+]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 0.0006 1.1 9.2 0.0 21 51 14 44 6 45 0.86 2 4 5e-05 0.088 12.6 0.0 21 50 42 71 40 73 0.87 3 4 0.0048 8.5 6.3 0.0 21 51 70 100 68 101 0.87 4 4 0.00016 0.28 11.0 0.1 21 46 98 123 95 128 0.91
Sequence Information
- Coding Sequence
- ATGTCGAGAGCAGTAAGTAGAACTATGAAGATAAATAGTGGCGAAAAGCCGTTTCAGTGCGAGATCTGCGAAAAGAAATTCCGTCAACTAAGTACATTAACCAACCACATGAAAATCCACACGGGTGAAAAACCTTTCAAGTGCACTATTTGCCAGAAAGATTTCCGGCAATCAAGCACATTAACAAATCACGTAAAAATACATACAGGCGAAAAACCATTTCATTGTACTTATTGTGGTAAACAATTTCGACAATTAAGTACGTTAACAAATCATTTGAAAATACATACCGGTGAAAAACCATTTGAATGTGCTGTatgtaaaaaacaatttcgtcAATCAAGTACACTtaataatcatattaaaatacatgcaggagataaaatgtttatgtgA
- Protein Sequence
- MSRAVSRTMKINSGEKPFQCEICEKKFRQLSTLTNHMKIHTGEKPFKCTICQKDFRQSSTLTNHVKIHTGEKPFHCTYCGKQFRQLSTLTNHLKIHTGEKPFECAVCKKQFRQSSTLNNHIKIHAGDKMFM
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01164355;
- 90% Identity
- iTF_01277187; iTF_01276478; iTF_01277343;
- 80% Identity
- iTF_01277187; iTF_01276478; iTF_01277343;