Palb000730.1
Basic Information
- Insect
- Ptychoptera albimana
- Gene Symbol
- -
- Assembly
- GCA_961205885.1
- Location
- OY540801.1:4681180-4682325[-]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 9 0.00087 1.5 8.6 0.1 17 48 62 93 57 97 0.85 2 9 0.71 1.3e+03 -0.7 0.2 21 31 95 105 93 121 0.80 3 9 0.032 57 3.6 0.4 21 44 123 146 113 150 0.84 4 9 0.00063 1.1 9.1 0.0 21 47 151 177 146 183 0.88 5 9 0.66 1.2e+03 -0.6 0.0 21 45 179 203 175 206 0.85 6 9 0.0044 7.9 6.4 0.1 21 44 207 230 199 239 0.86 7 9 0.0058 10 6.0 0.0 21 43 263 285 255 290 0.88 8 9 0.21 3.8e+02 1.0 0.0 21 45 291 315 286 318 0.85 9 9 2.9e-05 0.052 13.4 0.3 21 48 319 346 315 348 0.94
Sequence Information
- Coding Sequence
- ATGGAAGTGGATAATCCAGCTGTACTAACCAATTCAATTGATTCTAATGATGATATGGATATTGTGATCAAAGTAGAGCCCCACCAAAACAGTAATATTAATAGGAGTAAAGACATTGTGGGgttaaaaaacgtaaatacaCCAGATGAACTAATTACGTTTGTCGATTATGAAGTAAAAGAGTCAACGTGTAAAGAAGAAGACCGTTTTGAGTGTCCAATATGCATGGAAAAACTTTCGcaacttaatttattaaagaaacattTGCAGAATAATCATGAATCGGACGGGCCATACGATTGTCCATTCTGCGACATAAAAGTTAATCTTTTGGACGAATATGTGAGGCATAGAAAAAAtcacacaagaaaaaaacccGTCAGCTGCCAAGTTTGCAATCATGAATTTTTTGACTCGTATTGCCTTAAGAGACACATGCGAACGCATACGGGAGAGAAACCGTTTGAGTGTCCCGAATGTAAGAAACCTTTTCGAACGTCAGGGAATCTTAGtattcatttgaaaattcATGCTGGTGAACGGCCATACGAGTGTAATCTTTGCTCTATGCGATTTTTATTCTCCAGTAAGCTTAAAACGCATATGAATACGCATACGGGAGAACGGCCATATAAATGtcctatttgtaataaaacatttggTGATCGTAGCACTTTAAATCGTCACAAAAAGACTCATACTGGTGAACGACCCCACAAATGTGTCACTTGcgagaaaagttttattgcaGCTACCGATTTAACATCACATCAACGAATTCACACAGGTGAAAAACCGTTTCTTTGCTCTATATGTGGCAAAAAATTCGGAGATTCTCGAAATTTGTACCTGCATAAGAGAGTGCACAGTGGAGAACAGCGTTTCAAATGTGATTTGTGTGACAAACACTTTATCAGTTCGAGTAATCTAACGACACATATGCGAATACATACAGGTGAAAAGCCCTATAAATGCCAATACTGCGATGATGCTTTTCGTGATTCGACTAATTTAAAACGGCATAAGCAGCGACGACATCCTGAAGTTCTGATAACAATTGCTCCAGAACAATGTAACCAAGACTTGGAATTGGAAAACTCTCCACACCAATGCATGGTGCCTAAAGCAAATATTCCGTTGAGCTGA
- Protein Sequence
- MEVDNPAVLTNSIDSNDDMDIVIKVEPHQNSNINRSKDIVGLKNVNTPDELITFVDYEVKESTCKEEDRFECPICMEKLSQLNLLKKHLQNNHESDGPYDCPFCDIKVNLLDEYVRHRKNHTRKKPVSCQVCNHEFFDSYCLKRHMRTHTGEKPFECPECKKPFRTSGNLSIHLKIHAGERPYECNLCSMRFLFSSKLKTHMNTHTGERPYKCPICNKTFGDRSTLNRHKKTHTGERPHKCVTCEKSFIAATDLTSHQRIHTGEKPFLCSICGKKFGDSRNLYLHKRVHSGEQRFKCDLCDKHFISSSNLTTHMRIHTGEKPYKCQYCDDAFRDSTNLKRHKQRRHPEVLITIAPEQCNQDLELENSPHQCMVPKANIPLS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01276415;
- 90% Identity
- iTF_01276415;
- 80% Identity
- iTF_01276415;