Palb004795.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Ptychoptera albimana
Gene Symbol
RREB1
Assembly
GCA_961205885.1
Location
OY540802.1:33659464-33665582[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 13 7.8e-05 0.0044 17.1 0.4 1 23 243 265 243 265 0.98
2 13 0.00045 0.025 14.7 0.2 1 23 276 298 276 298 0.98
3 13 1.2e-05 0.00065 19.7 7.2 1 23 304 326 304 326 0.99
4 13 0.24 13 6.1 3.9 2 23 536 558 536 558 0.94
5 13 4.1 2.3e+02 2.3 0.4 1 11 602 612 602 622 0.80
6 13 0.0082 0.45 10.7 0.1 1 23 769 791 769 791 0.97
7 13 3.1e-05 0.0017 18.4 0.9 1 23 800 822 800 822 0.99
8 13 0.00046 0.025 14.7 2.0 1 23 828 851 828 851 0.97
9 13 0.00093 0.052 13.7 2.1 1 23 1206 1229 1206 1229 0.95
10 13 9.1e-05 0.005 16.9 0.4 2 23 1500 1521 1499 1521 0.97
11 13 0.14 7.9 6.9 6.3 1 23 1527 1550 1527 1550 0.97
12 13 0.0083 0.46 10.7 0.5 3 23 1724 1744 1722 1744 0.96
13 13 0.0044 0.24 11.6 5.1 1 23 1750 1772 1750 1772 0.99

Sequence Information

Coding Sequence
atggAGCGAACAACACGTAGCACAATGAGACGTATGACACGTGGAAATTCATCAACTGcaTCAAGTATTGAGAGACGTTCATCAACAAATAGTGAAGCATCATCAATTGAACCAATGGACATAAGTAcatcaaataaaacattaagttCAATAGATGATAACAATACATCCCTggttataacaataaataaaaataaaaaacaaattgattgtCATGAGTCAGAGGATACAAATGATGATGGTCATACAACAGaacatgatgatgatgaagatgaagaTGACGAGGATGATGCAGATGAGGATGAGGAAAATAATCATCTTGATgagtttaatcataaaaatattttaagacgTAAAAATCTACGTTTAATGGATAGTAGTGATGAGAATGGTATACTAATAATGCGTAAACGTTTACGTTTAAATGCTggccaacaacaacagcaacaacaagatACAATAACACCAGCcactaatttaataattaaaaaagataatgATTGTGGTGAAACAGCATcgataacaacagcaacaaccatATCACGATCACCATCACCAATATTACCACCGACAACAATACTATCAGCGAAACTACtaaccaacaacaataataataataataataattctaataaaaatttaaataataatattgagcagcaacaacaacaacaacatcaaccacCCACTatcgataatgataataatttaaataatgatataaaatatatttgtccAATATGTGATATAATATCAACGACACAACATGATTTTACAGAGCATATACGTagccataataataatggtaatgataatacacaaaattttaCCTGTCGAATATGCAGAaagGTTTTATCATCAGCATCGTCATTAGATCGTCACGTTTTGGTGCACACAGGTGAACGACCATTTACATGTAAATATTGTCATGTAACATTTACAACAAATGGTAATATGCATCGTCATATGCGTACACATAAGCATCATCGTGATTTagggggtggtggtggtggtggtggtggtggcgctggcagtggtggtggtggtagtaATGGTGGAAGTATTGGCGGTGGTAATGGTGGAGGTAGTGGAAGTGGAAATGGTGAAAATTATGAAAGTGATGTATCAACAGATTCAAGTGCTAGCAGTTGCGGTATTGGCAATAGTTTAATTGgtggcaataataataataataataataataataataataataataatacaaatgaacgtttaagaaataataataataataatataaatattaattataatattaataatcgttTAGATAGAAAACGTAAAAGtatcgatgatgatgattttcaaacaaattttcGACGtagaattaaaacattttgtaataataacaacaacaacaacaataacaataataacaacaacaaaaataataataataatattagtaataataacaacaacaacaacgctaataataataataataataataataatttaagtggtaataaacaaataacattaCCACAAAGATATTGTTGTCCAATATGTCGTCGTAATGATTTCGCAACAATGGTTATATTAGAAAATCATATGGATAAAGAACATCCTGATGTACAGGCAAAATGTCGTCATTGtgaagtattttttaatagttataAAGCATTAAATGCACATCGTTGTGGTTTACATTCAAAACCACCCGGTGCCCGTTTAGGTTTTAACGATAtgacatttattgatttttcaagTGAGAAATTTCCATTAATTGCCCGTTCAATGTGTGAACAAAGTATGCGTACACCgataacaaatcaaaaatatgAATGTACAAAATGTTATCGGGCATTTCCATGTTCTATAGCCGCTGAAATACATATGAATGATTGTGGAAAATTAGAAGGGGCTATAAGAGATTTTTCAATAGCTGCACGGCGCCAAAGACATTCTAGTGAAACATCTGAGGAGGATACAAAACGTGATATGTTTTTTGCAAACTTGGATTTACAGAATAAGTCAATGGTGTCAAACTCATCAACATTGGACACAATGAGTAGTCACGCTGGATCACCAACATTTCCCACCACTCTGTTAGATCATAATGAATCAGAAACATCATCTATGAATCATAATGATTCAAAAGATTTGGCCGATATTCAATCGATTCTTAATATAACATCATCTTCGGGAGGTTTCCTGCGTCAATTGGATAAACCGTTATCATTAAAAGACTCCCCACAATCAGGTGGATGTCGTGACAACGAGGAAGAAGCTCAAGATGCATTCACGTCTGAATTTCGAAAGATGAAATTACGTGGTGAATTCCCTTGTAAATTGTGTACCGCAGTTTTCCCTAATTTACGCGCTCTAAAAGGACATAATCGTGTTCATTTGAGTTCCGCAGGATCTGGCCCATATCGTTGTAATATGTGTCCCTATTCTATCCATGATAAAGCCGCTCTTATCCGTCATATGAGAACACATAATGGTGACCGACCATATGAGTGCGCAATCTGTAATTATGCCTTCACAACCAAAGCGAACTGTGAACGACATTTGCGTAATCGCCATTCCAAAACAACTCGTGATGAAGTcaaaaagaatattatttaccACCCATCTGAGGACTCGAGCGTAGAacatatttctaataaaattcaaatgttTAGTTCGCCAGATTTTGAAACTGATGATGATCATATTGCACCAAGAGATCGCAGTACACCCGTATCGCATTTGAAAGAAATTCTTTTGCCAACTACTGAAAAGCCAGCAAAAATTCAAGTGAAAAgcttagaaaaattaattcaaccaATCAAATTTGAAATACCAGAACCAGAGCCTGAACCAAAAGAACCAGAACCGGAACCTGTTGTACAGGATGTTAAACCAATTGATCTCAGTATGGATGCTTTGGATTTGAGTAAAAAGAGCAAACCTGTATATGTTGAAGAAAAGGAGGAAGAGGATTTGCCTAGCCCGAAGCTTCCAGACTTATCAATGCttgaaaaaaatcaacaattattCTTGATGCAACAACAAATCTTGAACGGAGCTTTGCCAAATGTTGATCCCGCTTATTATCTTCAATTGTACAGGAATTTAGTATTTCCTAGCGCTGAATTGCCATTCCATCGTCtgttattacaaaattcaCTATTGCCACCGACTAGCTTTACTGATATGAAAGACTTTTTCTCCAAAGATTTTCTACGTTCCCCACAAATGTCTGGTGGTAGCATGATGATGAATCCTATATTTTCGCAGCAACCGCAATCACCTTCTCATGCTCAAGCACAgcttcaacagcaacaacttcAGCTTcagcaacaagaacaacatCAACGCCAACAGCAAGAACAACATCACAGACAAAGAGAGCGTGAATCACATTCCCAACCTCCTCCAAGATCTGCCTCACAACCACCTCCAGCATTAAAACAATTAGATACGCCTACCAAGCAAAATCGTGATTTCTCACTGAATAATTCCGCAACTAGTACACCAAAACATAATCATTCCACGCCAACGTCACAACAGCAGTCTCACAGTCCTGGTCCAGTTAAGATGGTAATCAAAAATGGAGTTTTAATGCCAAAACAGAAGCAACGTCGTTACCGTACTGAGCGACCATTTGCATGTGAACATTGCTCTGCAAGATTTACTTTGCGCTCGAACATGGAGCGTCACATTAAACAGCAGCATCCACAATATTGGGCACAGAGACAACGCGGTGGACACAGTCTAATGCGTCGTGGCGGCGGAGGTGGTGGTGGCGgttctaataataatcattcggCTTCTCCAGTAGCACCACCAATGCCTAACAATTCAGTCATTTCAGACCAATTGAAATACGCAATTCTTGCTCAACATCTACAAAAGTTGCCACATAACCCAATGCACGCTAGCCCCTTAGGACAGCAACAGCCACCACAGCACTCTGCTGTTCCGCCTCGTACTAACAGCAACAGTACATTGAGTCCTCAAGATGATGACGAACCACAATTAGTGATTGATGAGGATTCTCAACCTGAGGATTTATCAAAATTGGAAAGTTCTCCAACACATGCACGTGGCGAGAGCGAGGAGAGAATCATGGTGGCAAAAAAAGTTGCAGAAAATATTTTGGAGCAAGCCAAAAATGCTGCCGCAGCTGCTTCTGAAACAATGCCGAATAACAACTTATCGTCTTCGGATGTAAaagattttgatttaaaaattggtTCAaacttaattaagaaaaaattggaTAGCGCTTTGATGGCAAAGCATTATACTAATGAAAATTCATCCGGCATAGAAGAAGGTGATTTGGTGTCCGTATCGAAATTAGTTGATAATGCGTATGGATATCATTTTCGatCCGAACCAGTTAATGTCGATCATAGCGATGAGGAAGGATTAGTCGCATCGGGAAGTGCTTCAGAGAGTAATAACTCTGGTGCAGAGGACCCAAGTCCACCATTTAGCCAAAAGAAGCGTTCTGCCTACAGCTTGGCACCAAATCGTGTCTCCTGTCCATATTGCCAACGTAAATTCCCATGGTCAAGTTCTTTGCGTCGTCACATTTTAACCCACACAGgacaaaaaccatttaaatgcTCCCATTGTCCATTGTTATTCACAACAAAAAGCAATTGCGATCGTCATTTGCTTAGGAAGCACGGTGACGTTGAGTCAGCTATGTCCTTGTCAGTGCCGATTGAAGACATTCCAGAACCAAAACGTGAAAAAAGTACTCCACCACCCCGATCacaaacaccaccaccaccacaatcCCAAACCCCACAACAACAGCCAAATCCTCAGCCAATTCAAGAAAAAGAATTACCACAAATCAAAGAAGAACGCCTAACTATTCCTACTAACTTATCagcattaaattttaatttgagttCTGGATTAGGTTTAAACATTCCAATGCTCAAAAGCGAATCTAATTTTCAACTATCCGGACCTGATCTACCATTCAAATGTCATTTGTGCGATTGTTCGTTCTCCGAGAGAATGCAATGTCTCGAACACATTAAACACTTGCACATCCAAGAGTTTGCATTACTAATCTCAAAAGGAGCCATAGAACCAGAGCCAACGCCACTAACACAAATGCAATTGAATGCTGATGAAGATGATAAAATTGATGCCAAAGGAAAATATCCAGATTACACTAATCGCAAGGTAATCTGTGCATTTTGTGTTCGTCGTTTCTGGTCAACAGAGGATTTACGCCGTCACATGCGTACACATTCTGGTGAACGTCCATTCCAATGTGATATTTGTTTGcgtaaatttacattaaaacataGCATGTTGCGTCACCAGAAGAAGCACAACAGTCACAATAATAGCCAATTGAATAATGTCAATAGTGGCTCTGATATGTCGGATGATGAAACAACACCAGGTACAACCATTTCACAACATCCAACCgcacaacaaatattattaatgcaacaacaacatcatcatcatcagcaagcattattaaaaatgaatttaaatatatcgCGATCAAGTGAAAAGGTAACGAATTCATGGCGTAATACAAATATTGTTGCAccgggtggtggtggtggcggtggAACAACAATAACCGatgaacattttaataaattaaataataataatataaatataaataataataatttaagtaataataataataataatggaaatataattaaaacggaAAAGGAATGTAATGATGATGAATCTGATTTAATTGGTAATTTATTGGGTATAAGTGATCAAGGTATATTAAATCGTGTTTTACATTCATCAGCCGATGAAGCTGCTAAATTATTAGGTGTTgacaagtaa
Protein Sequence
MERTTRSTMRRMTRGNSSTASSIERRSSTNSEASSIEPMDISTSNKTLSSIDDNNTSLVITINKNKKQIDCHESEDTNDDGHTTEHDDDEDEDDEDDADEDEENNHLDEFNHKNILRRKNLRLMDSSDENGILIMRKRLRLNAGQQQQQQQDTITPATNLIIKKDNDCGETASITTATTISRSPSPILPPTTILSAKLLTNNNNNNNNNSNKNLNNNIEQQQQQQHQPPTIDNDNNLNNDIKYICPICDIISTTQHDFTEHIRSHNNNGNDNTQNFTCRICRKVLSSASSLDRHVLVHTGERPFTCKYCHVTFTTNGNMHRHMRTHKHHRDLGGGGGGGGGGAGSGGGGSNGGSIGGGNGGGSGSGNGENYESDVSTDSSASSCGIGNSLIGGNNNNNNNNNNNNNNTNERLRNNNNNNININYNINNRLDRKRKSIDDDDFQTNFRRRIKTFCNNNNNNNNNNNNNNKNNNNNISNNNNNNNANNNNNNNNNLSGNKQITLPQRYCCPICRRNDFATMVILENHMDKEHPDVQAKCRHCEVFFNSYKALNAHRCGLHSKPPGARLGFNDMTFIDFSSEKFPLIARSMCEQSMRTPITNQKYECTKCYRAFPCSIAAEIHMNDCGKLEGAIRDFSIAARRQRHSSETSEEDTKRDMFFANLDLQNKSMVSNSSTLDTMSSHAGSPTFPTTLLDHNESETSSMNHNDSKDLADIQSILNITSSSGGFLRQLDKPLSLKDSPQSGGCRDNEEEAQDAFTSEFRKMKLRGEFPCKLCTAVFPNLRALKGHNRVHLSSAGSGPYRCNMCPYSIHDKAALIRHMRTHNGDRPYECAICNYAFTTKANCERHLRNRHSKTTRDEVKKNIIYHPSEDSSVEHISNKIQMFSSPDFETDDDHIAPRDRSTPVSHLKEILLPTTEKPAKIQVKSLEKLIQPIKFEIPEPEPEPKEPEPEPVVQDVKPIDLSMDALDLSKKSKPVYVEEKEEEDLPSPKLPDLSMLEKNQQLFLMQQQILNGALPNVDPAYYLQLYRNLVFPSAELPFHRLLLQNSLLPPTSFTDMKDFFSKDFLRSPQMSGGSMMMNPIFSQQPQSPSHAQAQLQQQQLQLQQQEQHQRQQQEQHHRQRERESHSQPPPRSASQPPPALKQLDTPTKQNRDFSLNNSATSTPKHNHSTPTSQQQSHSPGPVKMVIKNGVLMPKQKQRRYRTERPFACEHCSARFTLRSNMERHIKQQHPQYWAQRQRGGHSLMRRGGGGGGGGSNNNHSASPVAPPMPNNSVISDQLKYAILAQHLQKLPHNPMHASPLGQQQPPQHSAVPPRTNSNSTLSPQDDDEPQLVIDEDSQPEDLSKLESSPTHARGESEERIMVAKKVAENILEQAKNAAAAASETMPNNNLSSSDVKDFDLKIGSNLIKKKLDSALMAKHYTNENSSGIEEGDLVSVSKLVDNAYGYHFRSEPVNVDHSDEEGLVASGSASESNNSGAEDPSPPFSQKKRSAYSLAPNRVSCPYCQRKFPWSSSLRRHILTHTGQKPFKCSHCPLLFTTKSNCDRHLLRKHGDVESAMSLSVPIEDIPEPKREKSTPPPRSQTPPPPQSQTPQQQPNPQPIQEKELPQIKEERLTIPTNLSALNFNLSSGLGLNIPMLKSESNFQLSGPDLPFKCHLCDCSFSERMQCLEHIKHLHIQEFALLISKGAIEPEPTPLTQMQLNADEDDKIDAKGKYPDYTNRKVICAFCVRRFWSTEDLRRHMRTHSGERPFQCDICLRKFTLKHSMLRHQKKHNSHNNSQLNNVNSGSDMSDDETTPGTTISQHPTAQQILLMQQQHHHHQQALLKMNLNISRSSEKVTNSWRNTNIVAPGGGGGGGTTITDEHFNKLNNNNININNNNLSNNNNNNGNIIKTEKECNDDESDLIGNLLGISDQGILNRVLHSSADEAAKLLGVDK

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_01277186;
90% Identity
-
80% Identity
-