Basic Information

Transcription Factor Domain

TF Family: zf-BED
Domain: zf-BED domain
PFAM: PF02892
TF Group: Zinc-Coordinating Group
Description: The BED finger, which was named after the Drosophila proteins BEAF and DREF, is found in one or more copies in cellular regulatory factors and transposases from plants, animals and fungi. The BED finger is an about 50 to 60 amino acid residues domain that contains a characteristic motif with two highly conserved aromatic positions, as well as a shared pattern of cysteines and histidines that is predicted to form a zinc finger. As diverse BED fingers are able to bind DNA, it has been suggested that DNA-binding is the general function of this domain [3].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 10 0.00063 1.3 8.8 0.8 11 41 63 94 57 95 0.74

2 10 9.8e-05 0.2 11.4 1.5 12 38 92 115 84 120 0.80

3 10 0.14 2.8e+02 1.3 1.0 14 38 122 143 114 143 0.76

4 10 0.0049 9.9 6.0 0.5 1 28 138 164 138 175 0.81

5 10 0.018 37 4.1 0.4 15 40 181 203 166 206 0.74

6 10 0.12 2.5e+02 1.5 0.4 18 29 212 223 209 234 0.83

7 10 0.0016 3.3 7.5 0.5 18 41 240 260 232 263 0.88

8 10 0.014 29 4.4 5.3 18 38 275 292 267 297 0.84

9 10 0.0083 17 5.2 1.0 17 31 302 317 291 325 0.70

10 10 8.6e-05 0.17 11.6 0.8 15 41 328 351 319 352 0.83

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	10	0.00063	1.3	8.8	0.8	11	41	63	94	57	95	0.74
2	10	9.8e-05	0.2	11.4	1.5	12	38	92	115	84	120	0.80
3	10	0.14	2.8e+02	1.3	1.0	14	38	122	143	114	143	0.76
4	10	0.0049	9.9	6.0	0.5	1	28	138	164	138	175	0.81
5	10	0.018	37	4.1	0.4	15	40	181	203	166	206	0.74
6	10	0.12	2.5e+02	1.5	0.4	18	29	212	223	209	234	0.83
7	10	0.0016	3.3	7.5	0.5	18	41	240	260	232	263	0.88
8	10	0.014	29	4.4	5.3	18	38	275	292	267	297	0.84
9	10	0.0083	17	5.2	1.0	17	31	302	317	291	325	0.70
10	10	8.6e-05	0.17	11.6	0.8	15	41	328	351	319	352	0.83

Coding Sequence: ATGGAAAAAGATGAAACAAAATCAgttgacgatgatgatgaggtGCAATTAGTTATTCCGGATGATCCTTTGAATGAATGTTTTTTAGATAACTTAGAAAGCAATTTAGTAACAAGTGTTAATGCTGATACCAAGTGTGTTAAACGTAACCGAATTAAGGTTAAAACTGAGTTATCGGTGACGGTGAAGGAACGgagaaatatttacaaatgcTTGGAATGTGACAAAGTGTTTAGTCGTGGTTCGTCATTAGCAATACacagaaaacaacatttacgtaaaaaaatatttaaatgtgatttatgtggtaaaatatttaatcgaaaATCAAGTTTAATAGCGCACACCAAGGTGCACAACGACGAACGTCCGTTTAAGTGTAAATTCTGTTTGCTGACTTTTAGGAAGTCATCGAATCTGTTGAAGCATGAAATCTTTCATACGGGTGACACACGTTTACAGTGTCGGCAGTGTAAAGCTGTGCTGAGTACCGCAGCTAAATTGGAAAAGCATCTTGAAATTCATGAAAAGAGTGCGACTGAGGTGTTCACCTGTGATGCTTGCGGAAAAGTTTTTCGCAAAGCAAGAAACCTGTCGCTGCATATGAGAGTGCACACTGGTTACAAACCGTTCCACTGTCAAATATGCGATAAACATTTCTCACATCGCAGTGTCTATACGATTCATAAGCGAACGCACACCGGAGAACGTCCATTCACCTGTACCGTGTGCAGTAAAAGTTTTCCGCAAAGCTCTAACCTGATCACGCACATGAAAAGTCATGCCACCGAGTTGGGCACCATCGATTCGGTGAAAATTCATTCGTGCCGTCTTTGTGGTAAGTGTTTCTCATATAAAACCCACTTAATACGACACACACGTATTCATACTGGTGAACGACCATTCAAATGCGATATATGCGAGAAATCCTTTACACAATCCGGTTCACTTGTTGAACATATGCGGGTTCACACCGGTGAAAAACCGTACAAATGTACTGTTTGTGGTAAAAACTTTACACAATCCGGTGGTTTAATGCAACACCTGAAAAAACATTAG
Protein Sequence: MEKDETKSVDDDDEVQLVIPDDPLNECFLDNLESNLVTSVNADTKCVKRNRIKVKTELSVTVKERRNIYKCLECDKVFSRGSSLAIHRKQHLRKKIFKCDLCGKIFNRKSSLIAHTKVHNDERPFKCKFCLLTFRKSSNLLKHEIFHTGDTRLQCRQCKAVLSTAAKLEKHLEIHEKSATEVFTCDACGKVFRKARNLSLHMRVHTGYKPFHCQICDKHFSHRSVYTIHKRTHTGERPFTCTVCSKSFPQSSNLITHMKSHATELGTIDSVKIHSCRLCGKCFSYKTHLIRHTRIHTGERPFKCDICEKSFTQSGSLVEHMRVHTGEKPYKCTVCGKNFTQSGGLMQHLKKH

Sequence clustering based on sequence similarity using MMseqs2