Palb004676.1
Basic Information
- Insect
- Ptychoptera albimana
- Gene Symbol
- Lrrfip2
- Assembly
- GCA_961205885.1
- Location
- OY540802.1:32200382-32211322[-]
Transcription Factor Domain
- TF Family
- LRRFIP
- Domain
- LRRFIP domain
- PFAM
- PF09738
- TF Group
- Unclassified Structure
- Description
- LRRFIP1 is a transcriptional repressor which preferentially binds to the GC-rich consensus sequence (5'- AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA [1]. LRRFIP2 may function as activator of the canonical Wnt signalling pathway, in association with DVL3, upstream of CTNNB1/beta-catenin [2].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 3 0.23 1.6e+03 -2.3 0.2 236 274 141 179 128 190 0.70 2 3 4.1e-110 2.9e-106 354.8 33.1 1 299 254 543 254 544 0.94 3 3 0.39 2.8e+03 -3.0 5.1 7 27 576 598 550 617 0.50
Sequence Information
- Coding Sequence
- ATGGTGCAATTAAAAGTTCAAAGTTCTTTGCTTGGTGGCGGCGGTAAATATGCAAAGAAATGGGGACCTTCGTTAAGTGATTGTCTGGAAATTCAGGCAACATTTAATCAGGGTCTTGCTGTTAAAGGGACATGGAAATTTGTAttgagtaataataataatgaaaaaatgataaaatcaacgacaataaataaaaaatgtgataataataatgacttAAATGAGGAATTTGACTTTAGTGATGatgttttaaatgatttaaatagtGATGATGATGTAGATGGTGGTGTAGATCcagatttattaattgttaataataataataagaaaattagtgATGATTTAAGTGATGTACGCCAGTATCatcatgataataaattaatttataatgataagattgaaagtgttaataatattctaataaataatataaatataaagaattatctaaataataataataataataataataataataataaagaagcaaaTTGTGATGAAGCTTatcatgatgatgataatgataatgcaACAGATGGTGATATCGatgataatcatttattaataaataacgatCAACaccatcataataataataataataattttattaatcttcaTTCGAATCATCCGCATCtgcataatcatcatcataatcctCAGCaacagcataataataataataatactgagGATTTTTATAGTACCGAAGAGGATGAAGtgattgttaattttcttgGAAAATCTAATGAAATtgctGAGGCACGATTAGCAGCAAGACGACAAGCTCGTGCTGAGGCACGAGAAATTCGTATGCGCGAACTGGAGCGCCAACAAAAAGAACAAGAACAAAATGCTGATAGAGTATTTGATATGCAATCAGCATCTGGTATTGATCCTTTGGCCCGTTCTAGAATTGCTTTATCATCGACAACTGGTTCAGCGGCGGTACGTGCGAATAATTCAATGTCGTCAAGGCGTAGCAGTGAGGATTCCTTGGAAGAGGAAGGTAGAAGTTTACGTGATATCCGACATGAACTTaagGATGTTGAGGAACGTTTCCGTAAAGCAATGATAGCAAATGCCCAATTAGATAATGAACGTGGCTCACAATCATAtcaaatacaattattaaagGATAAATTAGAGGAAATGGAGGAGGCACATTCACAGTTGCAACGTGAATTCAGGGATAAATGTCGTGACCACGACGCATTAAAACGGAATAACGATAAATTAACGGAGGAACTACGTTTAGTGCAGGGACAATTAAATGAACGTGACACATTAATACATGATCAGGGTTTGGTTATTGTGCTGGTTGAGGAGGAGAATGGTACAGATGCTCGTCGTGCACTAGTCAGTGTTGAAAATGCACAATTATTAGGCTCTGTACAAGGTTCCTTAGATGTACGACTAAAAAAGTTTGCAGAAGAGAAACATCAAATGCAAAATGAGATAAAAACGTTGCAACAACAGTTGACCGATGCAAAAACACAAGGCCGTCGTTCTGGTTCAGTTAACGGGCCATTAggtgatgatgattatgaggATGCTCAACgAGAAGCAAATAAGCTGATAGcggattataaatataaattacaaaaaacggAACAGGAATTGGCTAGTTTACAGGCGAGCCTGGCTAGATCCGAAACACAAGTAATACGTTATAAAAGTACAGCAGAGGCGGCTGAAAAAGCTGAGgctgaattaaaaattgaacgaAGAAAATTACAGCGCGAGAATCGTGAAGCAATGGAACGTATGGAAGAGTTGGAAACAgcaaataatcatttattgaaACGTTTTGATAAgcttaaaaatgcaaaaagtgCATTATTGAAAGATCTTTGA
- Protein Sequence
- MVQLKVQSSLLGGGGKYAKKWGPSLSDCLEIQATFNQGLAVKGTWKFVLSNNNNEKMIKSTTINKKCDNNNDLNEEFDFSDDVLNDLNSDDDVDGGVDPDLLIVNNNNKKISDDLSDVRQYHHDNKLIYNDKIESVNNILINNINIKNYLNNNNNNNNNNNKEANCDEAYHDDDNDNATDGDIDDNHLLINNDQHHHNNNNNNFINLHSNHPHLHNHHHNPQQQHNNNNNTEDFYSTEEDEVIVNFLGKSNEIAEARLAARRQARAEAREIRMRELERQQKEQEQNADRVFDMQSASGIDPLARSRIALSSTTGSAAVRANNSMSSRRSSEDSLEEEGRSLRDIRHELKDVEERFRKAMIANAQLDNERGSQSYQIQLLKDKLEEMEEAHSQLQREFRDKCRDHDALKRNNDKLTEELRLVQGQLNERDTLIHDQGLVIVLVEEENGTDARRALVSVENAQLLGSVQGSLDVRLKKFAEEKHQMQNEIKTLQQQLTDAKTQGRRSGSVNGPLGDDDYEDAQREANKLIADYKYKLQKTEQELASLQASLARSETQVIRYKSTAEAAEKAEAELKIERRKLQRENREAMERMEELETANNHLLKRFDKLKNAKSALLKDL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -