Pnig041647.1
Basic Information
- Insect
- Pterostichus niger
- Gene Symbol
- -
- Assembly
- GCA_947425015.1
- Location
- OX380342.1:34367363-34375234[-]
Transcription Factor Domain
- TF Family
- zf-LITAF-like
- Domain
- zf-LITAF-like domain
- PFAM
- PF10601
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family display a conserved zinc ribbon structure [3] with the motif C-XX-C- separated from the more C-terminal HX-C(P)X-C-X4-G-R motif by a variable region of usually 25-30 (hydrophobic) residues. Although it belongs to one of the zinc finger's fold groups (zinc ribbon), this particular domain was first identified in LPS-induced tumour necrosis alpha factor (LITAF) which is produced in mammalian cells after being challenged with lipopolysaccharide (LPS)[2]. The hydrophobic region probably inserts into the membrane rather than traversing it. Such an insertion brings together the N- and C-terminal C-XX-C motifs to form a compact Zn2+-binding structure [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 3 0.47 8.4e+03 -1.5 0.0 5 16 5 16 2 29 0.72 2 3 7.1e-14 1.3e-09 39.6 7.0 5 70 180 244 177 244 0.90 3 3 2.2e-20 3.9e-16 60.5 11.7 2 69 389 456 388 457 0.96
Sequence Information
- Coding Sequence
- ATGACATCATCTCGAGCACGCTGTCGTCTCTGCAATGAAGAAATCACTTTCACCATTGGTAATCCCGTCGAACTAGGCTTCCACATGATCGACCGACACTCCAGCGGTTCCGTGGTTCAGTACAGCATCCACGAGGACGACAAAATCTGTCCTGCTCGTCGCCCAAGTGGAGGTAAATGTGCTGGAGGATGTCGTCGACGTCCTGATGGGGGACTCGAAATAGGTAAAGGTGTTGAAGAATCTGAGGGAGGCAatggcggtggcaatgaaggtggtgctgatggtggtagtggaagtggtggtggtggtggtagagttggggctggtagtggaggtgggggtggtagtaggggtgTAAGTAAAAAGGGGGTGGTTGCAGGAGAAGAGAATGAAAGAGATGGAGTGGATAAACAGGGAAGAAAGACGAATGGATGGGCTACGATGAAGAAATTGAGTAGTGGGAAGAAAGTTAGAAGAAAAAGGAAAAGTAAAGGGTTGTATAAGACTACTTTAGAGACGTGGACTGCTGGGGGATGTTCTATGATTTGTCCGGGGTGCAAGAACGAGGTGAAACCCCTAATAAAAACCCAAAAGAACAAGGTGGCATACACCTCCCTCGGCGCCACTTTCCTGTTAAGTTGCTGGCCTTTCTGTTTCCTGTTTCCGCTGCACCACAAGTGCTCGGTGGATCTGTACTGCCCCAACTGCAAGATGAAGCTCGGGGTGTACGATACAAACACCGGCACCTACCATACCAACGGGGATGTTGTCATGAAAAGTGATCAAGTGCCCAATATCAGGAGTCCTCTGTCCACGGACAGAAGCAGGCGGAGTCCTGGAGTAGCACGTCCAGTGACAATCAACATCCCGACGCCGACGTCATCGGAAGATCCGCCATCGTACTCTGTCACAGAGAGGATAGGAGTACCTATTGTAACACAAGGGAGAAGGTGTCATGTGGTGGTCGGCTATAGAGGAGATATGGGGCCTCGGGCTCCGTTTTATCATAGGACTCCGCCACCGACTTATAGTGAGTCGGAGCTGAATTCTAGCGGAGATGTTCAGCAACAAAACATTGTTCTAATTAAGATCTTCAATCACAGATCTAACCTAATTTCCGTGTATCCCGCAGCAACAGCATGCCTGCCAGTGCTCTGGACACGCCGTCCACGTTTCGCCACGTGTCCAGCCTGCGGCACGCGCAGCATCACCGAGGTGCACCTCCGGTGTTCGCGCAGCACTCACCTAGCAGTGCTGGCACTCTGCCTCTGCGGCTGTTGGCCGTTCTGTCTGCTGCCGTACGCTGCCCCCGCGTGCAAAGCGGCGCACCACCACTGTAGGAGGTGTCACTATCTTATCGGGGTGTATGATCCGTGGAGTCAACAAGCATGCAAACCATTTTACACACGTTCCTCAAGTTTAATTACCAATCAACCCTTCGTTCCAATCAGCGCTAAACGTGCCACAACTGCCTTCCTCCGAGTCAATTACCCGCGGTCCAACTCTTGTTCTTCAGCAGATCAGCAGCTGCCAAAGGTCCGCCACGACACCGGCCGCCAGGAGTCAGGTTACACTGACCGGCTCTTGAGCACGCGCCCTGATTTATGCTGCGTGTCGGCAGGTGGAGGAAACACGTGTGATGCTGGTGTTGGGGCATGGAGTGTACGTGTGCTTTGTAATTGGAGGAAAGGGTGA
- Protein Sequence
- MTSSRARCRLCNEEITFTIGNPVELGFHMIDRHSSGSVVQYSIHEDDKICPARRPSGGKCAGGCRRRPDGGLEIGKGVEESEGGNGGGNEGGADGGSGSGGGGGRVGAGSGGGGGSRGVSKKGVVAGEENERDGVDKQGRKTNGWATMKKLSSGKKVRRKRKSKGLYKTTLETWTAGGCSMICPGCKNEVKPLIKTQKNKVAYTSLGATFLLSCWPFCFLFPLHHKCSVDLYCPNCKMKLGVYDTNTGTYHTNGDVVMKSDQVPNIRSPLSTDRSRRSPGVARPVTINIPTPTSSEDPPSYSVTERIGVPIVTQGRRCHVVVGYRGDMGPRAPFYHRTPPPTYSESELNSSGDVQQQNIVLIKIFNHRSNLISVYPAATACLPVLWTRRPRFATCPACGTRSITEVHLRCSRSTHLAVLALCLCGCWPFCLLPYAAPACKAAHHHCRRCHYLIGVYDPWSQQACKPFYTRSSSLITNQPFVPISAKRATTAFLRVNYPRSNSCSSADQQLPKVRHDTGRQESGYTDRLLSTRPDLCCVSAGGGNTCDAGVGAWSVRVLCNWRKG
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -