Basic Information

Insect: Pterostichus niger
Gene Symbol: L
Assembly: GCA_947425015.1
Location: OX380347.1:29964531-29968812[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 20 0.3 42 6.4 5.9 1 23 3 25 3 25 0.98

2 20 1.5e-06 0.00021 23.0 4.3 1 23 31 53 31 53 0.99

3 20 2.5e-05 0.0036 19.2 0.2 1 23 59 81 59 81 0.98

4 20 0.00052 0.073 15.1 2.6 1 23 119 142 119 142 0.95

5 20 0.0077 1.1 11.4 2.4 1 23 243 266 243 266 0.96

6 20 0.64 90 5.3 0.1 2 23 287 309 286 309 0.94

7 20 0.13 18 7.5 0.2 3 23 378 398 377 398 0.98

8 20 0.34 49 6.2 3.0 2 23 432 453 431 453 0.84

9 20 0.0061 0.86 11.7 0.1 3 23 463 484 461 484 0.93

10 20 0.029 4.1 9.6 0.3 1 23 489 512 489 512 0.92

11 20 0.002 0.28 13.2 0.4 1 23 587 610 587 610 0.98

12 20 3.6 5.1e+02 3.0 0.6 3 23 675 697 674 698 0.85

13 20 0.0028 0.39 12.8 4.6 2 23 711 732 710 732 0.96

14 20 0.0033 0.46 12.5 0.5 1 23 742 764 742 764 0.98

15 20 2.4 3.5e+02 3.5 2.1 3 23 773 793 772 793 0.94

16 20 0.0045 0.64 12.1 0.9 1 23 868 891 868 891 0.96

17 20 0.42 60 5.9 1.2 1 23 895 917 895 917 0.96

18 20 0.0049 0.7 12.0 2.0 1 23 925 947 925 947 0.96

19 20 0.0098 1.4 11.0 0.1 1 23 955 977 955 977 0.97

20 20 0.084 12 8.1 1.0 1 23 984 1006 984 1006 0.94

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	20	0.3	42	6.4	5.9	1	23	3	25	3	25	0.98
2	20	1.5e-06	0.00021	23.0	4.3	1	23	31	53	31	53	0.99
3	20	2.5e-05	0.0036	19.2	0.2	1	23	59	81	59	81	0.98
4	20	0.00052	0.073	15.1	2.6	1	23	119	142	119	142	0.95
5	20	0.0077	1.1	11.4	2.4	1	23	243	266	243	266	0.96
6	20	0.64	90	5.3	0.1	2	23	287	309	286	309	0.94
7	20	0.13	18	7.5	0.2	3	23	378	398	377	398	0.98
8	20	0.34	49	6.2	3.0	2	23	432	453	431	453	0.84
9	20	0.0061	0.86	11.7	0.1	3	23	463	484	461	484	0.93
10	20	0.029	4.1	9.6	0.3	1	23	489	512	489	512	0.92
11	20	0.002	0.28	13.2	0.4	1	23	587	610	587	610	0.98
12	20	3.6	5.1e+02	3.0	0.6	3	23	675	697	674	698	0.85
13	20	0.0028	0.39	12.8	4.6	2	23	711	732	710	732	0.96
14	20	0.0033	0.46	12.5	0.5	1	23	742	764	742	764	0.98
15	20	2.4	3.5e+02	3.5	2.1	3	23	773	793	772	793	0.94
16	20	0.0045	0.64	12.1	0.9	1	23	868	891	868	891	0.96
17	20	0.42	60	5.9	1.2	1	23	895	917	895	917	0.96
18	20	0.0049	0.7	12.0	2.0	1	23	925	947	925	947	0.96
19	20	0.0098	1.4	11.0	0.1	1	23	955	977	955	977	0.97
20	20	0.084	12	8.1	1.0	1	23	984	1006	984	1006	0.94

Sequence Information

Coding Sequence: ATGCCGTTTCGGTGCGAATTTTGTTCGAGGCTGTTCAAGCACAAGAGATCACGTGACCGCCATATAAAACTTCACACGGGGGACAAGAAATACAGGTGTACCCATTGCGAAGCCGCCTTTTCAAGAAGTGATCATCTGAAAATTCACATGAAAACTCACGACACTCAGAAACCATTCCAATGTACTGTTTGCAACCGTGGATACAATACTGCAGCTGCTTTGACTTCTCACATGCAGAATCATAAAAGACAGCGACCGGAAACGCCTTTAGGTGCTGTTGGTGGTGGAAGTACCAACAACAGCGTCAAAACTCCTGGAAACGCTAGCGAAGAAAGTGTTTCCAGTCCTGATAGTTTCCATTGTTCACAGTGTGGGGATACGTTTAAGAAACAAGAACATTTGCAGGCTCACATACTGAATGCACATGCAACAAATTTGCTATCTCCAGAAGAATCAGCTCGCAAGAGTGTCCCGCTCGTAATTCCAGATCAATTACTACCCCAATTAACTCCTAAATTAGCTTGTATTTACTGTACAAAAGATAGTTTTACTACTATGGAACAACTTCAAATTCACGTGCAGGCTATGCATAGTTCCATATTAAATGGCGATCTTCGCGAGTTTTCTCTAGGCCGTCAAACTTCAACTTCATCTCCTCATCTATTAATGACACCTCCTCCAGCGGTAATATCTGGAAATGGCCATTTGTCCTCTTCAGCTTCTTTGTATTCTTGCGATATGTGTACCATGAGATTTCCTACACTTCACCGATTACGAAAACATTCTTTAACCGTCCATAGAAACTGTGACTTCACTCATCAAAAAGAAATGAATGATTCTGTTCATCAAAGTCCACTTGTGTGCGTCCAATGCGCCTTACCTTTTCATACGTCCGCTGCTTTTACCGAACACTATTTAATGGTACATGGTGGAAGTAGTCCTTCTTTATCTGCTGTTTCACCAGTTCCGGAACAAGTGAAACCAACGGATCTAAGCAGAAAAAACCCGAGGTCAAGTTCAGAAGACAGAAAATCTAAAAGAATGTGTGTTAATGAAGATGGATCATCTAGATTAGATTTAATGACTCCAAATGCAGCAACTGGGCAATATGATTATCCTAGCATGCTGCTGTGCAATCAGTGTGATGCAGCACTGCCAGATTTTGAATCTTTTAGAACTCATCTCAAATCACATTTGGAACAAACTGGAGGAGTTAGATCTTTCTTACAAACAGGTGCATCTAGTTTGTTGGATGCGTTCCAACAAGACAGTTTAAAACTACAAAATAACTGTATTTGTCCTCACTGTGGAGCAACTTTCAAAGATCTTGTTTCTTGTGAGCAACACGTTTATGCTCATTTTTTGTCAACTGCTGTTGAATATGGTTGTCAAAGTTGTCTGAAAATGTTTCCAAAGCCTGACGAACTGCAAAAGCATTTGATGGATATCCATGCTCATCATCTTTATAGATGTTCTCTTTGCAAAGAAATGTTCGATTCAAAAGTAGCTATTCAAGTACATTTTGCTGTGAAACATAGTAATGAATGTAAACTCTATCGATGTACAGCCTGTCCTAATTCTGTGGCGATGTTTCATACGGAACTAGAATTTAGTTTGCATGTTCGTACTGTACATGGTGCTCATGCATTGTTGTCTGCTCTTCAGTCACATTCTAAGACTCTTCGGTGTATGTTTTGCCGTCAAGTGTTTGGATCGGACTTGGAAATGCAATTTCATTTGGCCACTCATACGAAACAATTCCGCTGTCCAATTTGTTCTGAGAGTTTTCAGATTGAATTTCTACTGGATCGCCACATACAGACGTATCACAGTAATACAAGAAACATTAATGGTGAAACCGATGACAGCATCGATGGAGAAAAGTCCATAAAGAAATCCTCGTCCAGTTCTCCACAACAAGTCGGAAAAACTCACTCATCACCTGGAAGAACATCTCAAAAATCATCATCTGGTGAAAATAACAACGTGAAGAAGCAACATGAAGTGTCTCAATTAAACAACTGTGATATATGTGAACGTAACGATTTTAGTAACGAAACTGAGTTAGTGGCCCACCGAAAACTAGTTCATCATGCAAGAAATAATACTAAAAATGGTGTAGTTAGCCTACATTGTGCGTACTGTAACGAAAATTGTAAAACCCGTACCGAACTGGAAAATCACATGAAAAGTCATTCACAAAGTAGTGGAGTTTCAGGCAAACACAAATGTAATATTTGTGATGAAATCTGTCCATCGGCTGTCTTGCTAGCAGAACACAAATTAACACACTGTAAAGTTATATCGGGCAATTGCTGCACTCAATGTAAAGCAAGTTTAACTAATGAAGAACAATTTTATTCTCATTTAGTTCAACATATTGCATTACCCACCCCGTGCGTAATTTGTCGTCAAACTTTAATTTCCGATGTGGAAGTTCGGATTCATTCGCAATTTCATTTACGCAATACCATGCAGCAAGCTGAGTATCAGTGTTCTATTTGTTTTAAAATTATTGATGTACAAAATGTAATTATTACAAAGGGCAATTACATGTGCTCCGAATGTTATTCTTTACCAAATGATTCTCAAAAACGAAATTTTCACTGTACTGAATGCCAGTTTTCCTATGAAACCAGTTTAGCATTAGAACAGCATATGGATTCTGCACATAGTAAGACGTATACATGTATTAAATGTCAAGCTTGTTTTGATAATGAAAGAGATGTGCAAATTCACGTTACAACGCATTTAATGACAGAAGGCAGTAACCATGAATGCCATTTATGTCGAAGATTATTCTCAAGTCCGATGAAACTACAAGCTCATTTAATTGAACACACTTTTGCTGGTTGCGGTGGATTTACTTGTTACTTGTGTTCGGCTGTATTTACAGGTGCACAAGGACTTCAGAATCACATCATTGAACATGGTTTAGCTGCAAGACCGTACGATTGTCCTCAGTGCAATCTGAAATTCTTTTTCAGAGCTGAACTGGACAATCATAGTTACAGCCATTTGGGTCGTAGTTCAAGAACTTCAACAGAAGTTGACGTGTCTCTAATGAGTCCCAAAGCTTATTACGTATCTGTAAACGGAAAATATGATCCTACGAAAAACGGAGAACTTTCCAAATATTATATAAAGGATCTGAAGAACAAAAAGGGAAATAAAATTGATGGAAACGAAGTACAAAACCAAAAAAATATCTCAGAAAAGGCAATTAGTGAAATTGAGGAAAAACCAATTGTGAAAGAAGAACCAAATGATGAAACAGAAGATAGAAAAGAAGAATATGTTGATATTGATTTTCCTACAACTTCAACCAAATTTAAAAATGAACACACTTCTGTAGGAGAAAGTTCATTATATGAAAGTACGGAGGTTCCAAACGTTACTAGTGATTAA
Protein Sequence: MPFRCEFCSRLFKHKRSRDRHIKLHTGDKKYRCTHCEAAFSRSDHLKIHMKTHDTQKPFQCTVCNRGYNTAAALTSHMQNHKRQRPETPLGAVGGGSTNNSVKTPGNASEESVSSPDSFHCSQCGDTFKKQEHLQAHILNAHATNLLSPEESARKSVPLVIPDQLLPQLTPKLACIYCTKDSFTTMEQLQIHVQAMHSSILNGDLREFSLGRQTSTSSPHLLMTPPPAVISGNGHLSSSASLYSCDMCTMRFPTLHRLRKHSLTVHRNCDFTHQKEMNDSVHQSPLVCVQCALPFHTSAAFTEHYLMVHGGSSPSLSAVSPVPEQVKPTDLSRKNPRSSSEDRKSKRMCVNEDGSSRLDLMTPNAATGQYDYPSMLLCNQCDAALPDFESFRTHLKSHLEQTGGVRSFLQTGASSLLDAFQQDSLKLQNNCICPHCGATFKDLVSCEQHVYAHFLSTAVEYGCQSCLKMFPKPDELQKHLMDIHAHHLYRCSLCKEMFDSKVAIQVHFAVKHSNECKLYRCTACPNSVAMFHTELEFSLHVRTVHGAHALLSALQSHSKTLRCMFCRQVFGSDLEMQFHLATHTKQFRCPICSESFQIEFLLDRHIQTYHSNTRNINGETDDSIDGEKSIKKSSSSSPQQVGKTHSSPGRTSQKSSSGENNNVKKQHEVSQLNNCDICERNDFSNETELVAHRKLVHHARNNTKNGVVSLHCAYCNENCKTRTELENHMKSHSQSSGVSGKHKCNICDEICPSAVLLAEHKLTHCKVISGNCCTQCKASLTNEEQFYSHLVQHIALPTPCVICRQTLISDVEVRIHSQFHLRNTMQQAEYQCSICFKIIDVQNVIITKGNYMCSECYSLPNDSQKRNFHCTECQFSYETSLALEQHMDSAHSKTYTCIKCQACFDNERDVQIHVTTHLMTEGSNHECHLCRRLFSSPMKLQAHLIEHTFAGCGGFTCYLCSAVFTGAQGLQNHIIEHGLAARPYDCPQCNLKFFFRAELDNHSYSHLGRSSRTSTEVDVSLMSPKAYYVSVNGKYDPTKNGELSKYYIKDLKNKKGNKIDGNEVQNQKNISEKAISEIEEKPIVKEEPNDETEDRKEEYVDIDFPTTSTKFKNEHTSVGESSLYESTEVPNVTSD

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00470282;
90% Identity: -
80% Identity: -