Basic Information

Insect: Pterostichus niger
Gene Symbol: -
Assembly: GCA_947425015.1
Location: OX380336.1:2233008-2235366[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 11 0.00092 0.13 14.3 4.7 1 23 155 177 155 177 0.98

2 11 0.037 5.2 9.2 9.6 1 23 183 205 183 205 0.93

3 11 1.5e-05 0.0022 19.9 5.3 1 23 211 233 211 233 0.98

4 11 0.0005 0.071 15.1 2.5 1 23 239 261 239 261 0.95

5 11 4.5e-06 0.00063 21.5 0.8 1 23 267 289 267 289 0.97

6 11 2e-06 0.00028 22.7 0.2 1 23 295 317 295 317 0.97

7 11 0.00025 0.036 16.0 1.7 1 23 322 344 322 344 0.97

8 11 2.1e-06 0.00029 22.6 1.2 1 23 350 372 350 372 0.97

9 11 0.0014 0.19 13.7 0.0 2 23 379 400 378 400 0.96

10 11 0.0095 1.3 11.1 3.8 1 23 452 474 452 474 0.96

11 11 0.0006 0.085 14.9 6.9 1 23 484 506 484 506 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	11	0.00092	0.13	14.3	4.7	1	23	155	177	155	177	0.98
2	11	0.037	5.2	9.2	9.6	1	23	183	205	183	205	0.93
3	11	1.5e-05	0.0022	19.9	5.3	1	23	211	233	211	233	0.98
4	11	0.0005	0.071	15.1	2.5	1	23	239	261	239	261	0.95
5	11	4.5e-06	0.00063	21.5	0.8	1	23	267	289	267	289	0.97
6	11	2e-06	0.00028	22.7	0.2	1	23	295	317	295	317	0.97
7	11	0.00025	0.036	16.0	1.7	1	23	322	344	322	344	0.97
8	11	2.1e-06	0.00029	22.6	1.2	1	23	350	372	350	372	0.97
9	11	0.0014	0.19	13.7	0.0	2	23	379	400	378	400	0.96
10	11	0.0095	1.3	11.1	3.8	1	23	452	474	452	474	0.96
11	11	0.0006	0.085	14.9	6.9	1	23	484	506	484	506	0.97

Sequence Information

Coding Sequence: ATGTGTGCAGCTCCTAATTTAACTGGTACCTTTGGGTACTGGCATCCCGCTGATACTCACACAACCCCTACATCAAGTATAACAGACTCTTCATCGCTAAGTTGTTATGGTCCACCCAGTATTCTCCAAGATGCATCCAAACTCAAAGCCGTTCGACGTCCGATGTTCCTGGTGAACAACAAGCACGCCCAAGATGTGTTTTCAAATAACGCATGCGAGAAAGGCTGTCCCTGTGAACCAGTCCCGATTTCGTTCGGTGGTGAGAAAGAAAGCAAACATTTCATGACGCCATTAGGTCCATTACAACTTACTGCTGAAGAATGTAACGAGATACTAATGAAACGTGCTGCAGCAGCTGCTGGGGGTACGAACCAGAACCAGATCCCTTCGCACTCGCCGCAGAGCCCTCCAGAGAGCAAGCCGCAGCCCCAGCCGCCCGCAGCGCCTGCCAAGATCCGGCCCTACTCATGTCTGGAGTGTGGCAAGTCCTTCCTGTTGAAGCACCACCTCACCACGCACACGAGAGTGCATTCGGGCGAACGGCCGCATGTCTGCATTCACTGCGGCAAGACGTTCGCCCACAAGCACTGTCTCAATACTCATCTACTCTTGCACTCGAGTCAGCGGCCCTATCAGTGTCCAGAGTGCAAGAAGAGCTTCACGCTCAAACACCATCTTCTCACACACTCTAGAGTTCACAGTCGTGAACGACCTTTCATCTGTACGGAGTGTGGAAGGACGTTTCCTCTTAAACGTCACCTGGTGACACACTCCAAGTTTCACGCTGGAGAAAGACCGTTTGTTTGTGATGACTGCGGCGAATCTTTTGCACAGAAAGACCATCTTGTGATGCACTCTCGATTCCATGGCTCACTTAATCCGTTTGTGTGTCCGGACTGTGGAGCAACTTTTACTCGTAAATTTGAGCTGGTGAACCATGGTCGACTGCATGGACGACTTCCTCACAGTTGTCCTGTGTGCAATAAAGAATTTTTACAAAAGAGGACGTTGGTGGCGCATATGAGATTTCACTCTGGTGACCAGCCATTCTCTTGTGTACAGTGCGGGGAATCATTCAGATCAAAATCCGAACTAACGCAGCATACAAAGCTGCACTCGCCCGACCGACCGCTGTCGTGTCGCGAGTGCGGCAGCGCGTTCAACAGCCCTGAAGCATTGGCCTTGCACGTCCGGCTACACTCTGGTGATTCCGCATTGGTAACAGATCTGTGTGCACTAACTGCCTCTCTGCAATCCTCAGGCGGGTTCTCATTGAGCGTGCCGCAGGCCAACAGTTCGGCGGCTCCGCAGACGCCAGCTGCGCCGCCGGCTAACGGCGTCAAGCAGAAGAATCACATCTGCCTGCACTGTGGGAAAGCGTTTGCGGCAAGGCATGGCCTCCTACAGCACAACAAGCGCCATCCTGGAGGTGGATGTACTCTCAGAGCGCATGTTTGTCCCACGTGTCATAAAGGGTTCTTCCAGAagaatcatctattgttacatcagcgccagcacatggaacagccgaggcaaccgggacctgcgaatgttgctagtcagcaacagcagcagcaacaacagcagcagcagcaacaacaacaacagcagcagcagcaacaacagcaacaacatcagcagcagcagcaggtggcgcagaaccagcagctacagtaa
Protein Sequence: MCAAPNLTGTFGYWHPADTHTTPTSSITDSSSLSCYGPPSILQDASKLKAVRRPMFLVNNKHAQDVFSNNACEKGCPCEPVPISFGGEKESKHFMTPLGPLQLTAEECNEILMKRAAAAAGGTNQNQIPSHSPQSPPESKPQPQPPAAPAKIRPYSCLECGKSFLLKHHLTTHTRVHSGERPHVCIHCGKTFAHKHCLNTHLLLHSSQRPYQCPECKKSFTLKHHLLTHSRVHSRERPFICTECGRTFPLKRHLVTHSKFHAGERPFVCDDCGESFAQKDHLVMHSRFHGSLNPFVCPDCGATFTRKFELVNHGRLHGRLPHSCPVCNKEFLQKRTLVAHMRFHSGDQPFSCVQCGESFRSKSELTQHTKLHSPDRPLSCRECGSAFNSPEALALHVRLHSGDSALVTDLCALTASLQSSGGFSLSVPQANSSAAPQTPAAPPANGVKQKNHICLHCGKAFAARHGLLQHNKRHPGGGCTLRAHVCPTCHKGFFQKNHLLLHQRQHMEQPRQPGPANVASQQQQQQQQQQQQQQQQQQQQQQQQHQQQQQVAQNQQLQ

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01041165;
90% Identity: iTF_01226070; iTF_00029579;
80% Identity: -