Basic Information

Insect: Pterostichus niger
Gene Symbol: -
Assembly: GCA_947425015.1
Location: OX380341.1:915094-917124[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 10 0.012 1.7 10.8 2.3 1 23 179 202 179 202 0.96

2 10 3.7e-06 0.00053 21.8 0.6 1 23 208 231 208 231 0.97

3 10 2.3e-06 0.00032 22.5 0.5 3 23 239 259 237 259 0.96

4 10 5.8e-08 8.1e-06 27.5 2.8 1 23 265 287 265 287 0.98

5 10 1e-06 0.00014 23.6 0.1 1 23 293 315 293 315 0.97

6 10 1.5e-05 0.0022 19.9 1.5 1 23 321 343 321 343 0.97

7 10 0.0011 0.16 14.0 3.2 1 23 471 493 471 493 0.98

8 10 0.00089 0.13 14.3 3.7 1 23 499 521 499 521 0.97

9 10 5.8e-07 8.2e-05 24.3 2.2 1 23 527 549 527 549 0.99

10 10 6.1e-06 0.00086 21.1 0.1 1 23 554 576 554 576 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	10	0.012	1.7	10.8	2.3	1	23	179	202	179	202	0.96
2	10	3.7e-06	0.00053	21.8	0.6	1	23	208	231	208	231	0.97
3	10	2.3e-06	0.00032	22.5	0.5	3	23	239	259	237	259	0.96
4	10	5.8e-08	8.1e-06	27.5	2.8	1	23	265	287	265	287	0.98
5	10	1e-06	0.00014	23.6	0.1	1	23	293	315	293	315	0.97
6	10	1.5e-05	0.0022	19.9	1.5	1	23	321	343	321	343	0.97
7	10	0.0011	0.16	14.0	3.2	1	23	471	493	471	493	0.98
8	10	0.00089	0.13	14.3	3.7	1	23	499	521	499	521	0.97
9	10	5.8e-07	8.2e-05	24.3	2.2	1	23	527	549	527	549	0.99
10	10	6.1e-06	0.00086	21.1	0.1	1	23	554	576	554	576	0.97

Sequence Information

Coding Sequence: ATGGCCTGGGTTAATTATGCAACAACAATTTGTAGACTATGTTTACAACAAGATGGTTTTTTACTTGCAATTTTCAATAATCATGTGAACGACAATGTAGATAACAACATTCATAGGAAAATAATAGAATGCACGACATTAGAGCTTTCTTCTGGCGACGGACTCCCTCCGTGTATTTGTCACCGATGTCTCTACAAGGTAGAATTATGTCTGGAATTCAAACAACAATGTTTAATGGCCGATGCAACCTTACGCCAAGTAAACTGCCAGCTCACGAACCAAACCGACAGAAATGGCGAACGAAACAGCGATCAAGAATCCGAAGACATTCTTTATCCATCTACCACTGTTTCCGCGGCAGATTTCGAGAAATTTAATCAGAAATTCATTCCAGATCACGGACAGAACGCGGAGAACGTCGTCTTGGTCGTCAATCCCGACTTGGAATACGACTCCGATAATGAATCTGAATTCGGGCAACACAGCGACGCTGAGAATAACGATACAGCAGATTTTACAGAACTTAAGAATGTGTTCATGTGTAAATACTGTGATCGAGCTTATACTGAAAAAGACGCGTGTAGAAATCACGAGAATACAGAACACAATAAAGAAGTTCCGTTTATGTGTTCGCAGTGTGATATGTCGTTTGCAGACAGGACAAACTATACAGCTCATATGAAGTCAGttcacgcgaacgacaaaccttttggatgtccacaatgtcctcgaagtttcagccgaagatctgacctccgcaagcatactgtggtccacacgggaattaaacctttcacctgtaacatctgctacaaatctttctcccgaaacacaaatctaaccaaacatcttcgtattcattccggtcacaagccctacatttgccctcagtgccctaaaacctttatttctaaaggtgatctcacccgtcatgccctgatccactctggtcataaaccctttgcctgtaattactgtgatcaaagttttggccgacgagacaaactcttaCGCCACGAAAAAAGACATTTTCCAAATAGCAACGAAGATAGGTCATCAGCAGTTTCCGAGCTAGAATTATTGCGGCAACAAATTGCAATGAGCGGTTATCCATACGAATCAACCGTTAAACAGGAAATTGAGCAGGAGGAGGAACCAGAAGAAGAAGAAAAATGGAGCGGAGAGAATATGGTTATTAGCGTAGATCCATTCAACCACGAAGAAAATTATTCCAACTTAGGGGATAACTCTAGATCACATACTGACTCTCCAGTTCATGATCTACCGCGAATTCCGGATCATATTCAAAATGATCTTCCTAGACTTCCGGAACACATAACCGGCGATGACACTTATCATGATTACGATCCGCTTAAAAAGCAAATGAAACATGTTAGTTCGATTAAAAAATACATTTGTTTCGTTTGTCATAAACGATTTTTGTCAAATGAAAGTTTGCGATCACATCAGCTTACACACACTCAACACAAGCCGCACGTTTGTTCACAATGCTCAAAATCTTTTCTCCGGAAACGGGAGCTAGATCGCCACATGACAACGCATTCAGGGACGAAGCCCTTCAAATGTACACAATGCGAGAAACGATTTGGACGGAAAGACAAACTTGTCCGACATATGCGAATCCACAATGTCGGTGAGCACGTGTGTGTGGTTTGTGGGGCAAGATTTACGCGTCCGGAAAGTTTACTAGTGCACATGAAAATACACGCGAATTTGGAAGAGAGTCCGCAAGTATAA
Protein Sequence: MAWVNYATTICRLCLQQDGFLLAIFNNHVNDNVDNNIHRKIIECTTLELSSGDGLPPCICHRCLYKVELCLEFKQQCLMADATLRQVNCQLTNQTDRNGERNSDQESEDILYPSTTVSAADFEKFNQKFIPDHGQNAENVVLVVNPDLEYDSDNESEFGQHSDAENNDTADFTELKNVFMCKYCDRAYTEKDACRNHENTEHNKEVPFMCSQCDMSFADRTNYTAHMKSVHANDKPFGCPQCPRSFSRRSDLRKHTVVHTGIKPFTCNICYKSFSRNTNLTKHLRIHSGHKPYICPQCPKTFISKGDLTRHALIHSGHKPFACNYCDQSFGRRDKLLRHEKRHFPNSNEDRSSAVSELELLRQQIAMSGYPYESTVKQEIEQEEEPEEEEKWSGENMVISVDPFNHEENYSNLGDNSRSHTDSPVHDLPRIPDHIQNDLPRLPEHITGDDTYHDYDPLKKQMKHVSSIKKYICFVCHKRFLSNESLRSHQLTHTQHKPHVCSQCSKSFLRKRELDRHMTTHSGTKPFKCTQCEKRFGRKDKLVRHMRIHNVGEHVCVVCGARFTRPESLLVHMKIHANLEESPQV

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00767458; iTF_01226053; iTF_01104967; iTF_00769039; iTF_00029563;
90% Identity: iTF_01226053;
80% Identity: -