Basic Information

Insect: Harpalus rufipes
Gene Symbol: -
Assembly: GCA_951394225.1
Location: OX596279.1:28803109-28805396[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 10 0.051 11 8.5 2.9 1 23 174 197 174 197 0.92

2 10 1.1e-05 0.0024 20.0 0.6 1 23 203 226 203 226 0.97

3 10 1.8e-06 0.0004 22.5 0.5 3 23 234 254 232 254 0.96

4 10 5.3e-08 1.1e-05 27.4 2.9 1 23 260 282 260 282 0.98

5 10 5.6e-07 0.00012 24.1 0.1 1 23 288 310 288 310 0.97

6 10 4e-05 0.0088 18.3 2.8 1 23 316 338 316 338 0.98

7 10 0.0016 0.35 13.2 2.8 1 23 455 477 455 477 0.98

8 10 0.00014 0.031 16.6 2.7 1 23 483 505 483 505 0.97

9 10 4.4e-07 9.6e-05 24.4 5.1 1 23 511 533 511 533 0.99

10 10 5.1e-07 0.00011 24.2 0.2 1 23 538 560 538 560 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	10	0.051	11	8.5	2.9	1	23	174	197	174	197	0.92
2	10	1.1e-05	0.0024	20.0	0.6	1	23	203	226	203	226	0.97
3	10	1.8e-06	0.0004	22.5	0.5	3	23	234	254	232	254	0.96
4	10	5.3e-08	1.1e-05	27.4	2.9	1	23	260	282	260	282	0.98
5	10	5.6e-07	0.00012	24.1	0.1	1	23	288	310	288	310	0.97
6	10	4e-05	0.0088	18.3	2.8	1	23	316	338	316	338	0.98
7	10	0.0016	0.35	13.2	2.8	1	23	455	477	455	477	0.98
8	10	0.00014	0.031	16.6	2.7	1	23	483	505	483	505	0.97
9	10	4.4e-07	9.6e-05	24.4	5.1	1	23	511	533	511	533	0.99
10	10	5.1e-07	0.00011	24.2	0.2	1	23	538	560	538	560	0.97

Sequence Information

Coding Sequence: ATGGCCTGGTCTAATTATGCAACGATTTGCAGATTGTGTTTGCAGCAAGATGGATTTTTACTTGCAATTTTCAATAACCACGTAAACGGCAATATCAATACTAGTATTCATCAAAAGATAGCGGAGTGCACGGCTTTAGAGCTCAACTCTGGCGATGGGCTGCCTCCATGCATATGCCATCGTTGCCTCTACAAGGTAGAATTATGTCTAGAATTCAAGCAACAATGCTTGATGTCTGATGCTACTTTACGCCAAGTAACCCACCCAAACGATCGAAATGGCGAACGGAACAGCGACCAAGAATCAGAAGATATCCATTATCAACCTACAACCGTTTCTGCAGctgaatttgaaaaattcaaccAGAAATTCATTCCTGATCATGGACAGAACGCTGAAAACGTTGTTATGGTCATTAACCCTGAGTTAGAATATGATTCAGATAATGAATCCGAATCTGGGAATCACAGCGATGCAGAGAACATCGACACAGTAGAATTTACAGAGCTTaagaatgtatttatgtgtaaaTATTGTGATCGAGCTTACACGGAAAGAGATTCGTGTAGAAATCACGAAAATAACGAACACAATACTGAGGTTCCATTTATGTGTTCTCAATGTGATATGTCTTTTGCTGATAGAACTAATTACACAGCCCACTTAAAATCGGTTCATTCCAATGATAAACCATTTGGATGTCCACAATGCCCTCGAAGTTTTAGCCGAAGATCTGATCTTCGAAAACATACTGTGGTTCATACAGGAATTAAACCATTTACttgtaatatttgtttcaaatcTTTTTCGAGAAATACGAATCTTACAAAGCATTTACGTATTCATTCTGGCCATAAACCATACGTTTGTCCTCAGTGCcccaaaacttttatttcaaaaggtGATCTCACTCGTCATGCCATAATTCACACCGGACATAAACCATTCACTTGTAATTTCTGCAACCAAAGTTTCGGCCGAAGAGATAAATTAATTCGCCACGAAAAGAAACATTTTCCCAATAATGAAGATCGTTCATCGGCAATTTCTGACTTAGAATTATTGCGGCAACAAATAGCGTTGAGCGGTTATACTTACGAATCGGCAGTTAAGCAAGAAATCGAACAAGAAGATGAACAAGAGGAAGATGATAAATGGGGAGGAGAAAATATGGTTATAAGCGTTGACCCTTTCAACCATGACGGAAACTTTTCTAATCTACAAACTGACGATGACCTGCCACGTATTCCAGATCACATTCAGAACGATTCGAATGATCTGCCAAGAATTCCCGACCATATAACTGCTGACGGTTACCATGACTTTGATCCGTTGAAACAACACGTTAGTTCTATAAGAAAAtacatttgttttgtttgtcatAAACGATTTTTATCGCAGGAAAGTTTACGATCCCATCAAGTTACTCATTCTCAACACAAGCCTCATGTTTGTCCGCAGTGTTCAAAATCGTTTTTAAGAAAACGGGAATTAGATCGGCATATGACTACACATTCAGGTACGAAACCATTTAAATGTACACATTGTGAAAAACGATTTGGAAGAAAAGATAAATTAGTAAGGCATATGCGTACACACAATATTGGCGACCATGTTTGTCCGATTTGTGATACAAGATTTGTAAGACCTGAAAGTTTATTAGTTCATATGAAAGTTCATGCAAATGCAGAAGAAAATgcacaataa
Protein Sequence: MAWSNYATICRLCLQQDGFLLAIFNNHVNGNINTSIHQKIAECTALELNSGDGLPPCICHRCLYKVELCLEFKQQCLMSDATLRQVTHPNDRNGERNSDQESEDIHYQPTTVSAAEFEKFNQKFIPDHGQNAENVVMVINPELEYDSDNESESGNHSDAENIDTVEFTELKNVFMCKYCDRAYTERDSCRNHENNEHNTEVPFMCSQCDMSFADRTNYTAHLKSVHSNDKPFGCPQCPRSFSRRSDLRKHTVVHTGIKPFTCNICFKSFSRNTNLTKHLRIHSGHKPYVCPQCPKTFISKGDLTRHAIIHTGHKPFTCNFCNQSFGRRDKLIRHEKKHFPNNEDRSSAISDLELLRQQIALSGYTYESAVKQEIEQEDEQEEDDKWGGENMVISVDPFNHDGNFSNLQTDDDLPRIPDHIQNDSNDLPRIPDHITADGYHDFDPLKQHVSSIRKYICFVCHKRFLSQESLRSHQVTHSQHKPHVCPQCSKSFLRKRELDRHMTTHSGTKPFKCTHCEKRFGRKDKLVRHMRTHNIGDHVCPICDTRFVRPESLLVHMKVHANAEENAQ

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01275598;
90% Identity: iTF_01104967;
80% Identity: -