Pnig044904.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Pterostichus niger
Gene Symbol
ZNF236
Assembly
GCA_947425015.1
Location
OX380335.1:38604744-38610327[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 25 0.0047 0.67 12.0 3.0 1 23 156 178 156 178 0.98
2 25 1.6 2.3e+02 4.0 0.4 1 23 184 206 184 206 0.89
3 25 1e-05 0.0015 20.4 0.3 2 23 212 233 212 233 0.97
4 25 0.031 4.4 9.5 0.1 1 23 239 261 239 261 0.97
5 25 9.5e-05 0.013 17.4 4.4 2 23 273 294 272 294 0.96
6 25 2.3e-05 0.0032 19.3 2.5 1 23 319 341 319 341 0.98
7 25 2.2e-06 0.00031 22.5 0.7 1 23 347 369 347 369 0.98
8 25 9e-05 0.013 17.4 1.4 1 23 375 398 375 398 0.97
9 25 0.001 0.15 14.1 2.4 1 23 408 431 408 431 0.97
10 25 1.9e-05 0.0027 19.6 1.4 3 23 515 535 513 535 0.96
11 25 0.00044 0.062 15.3 3.1 1 23 541 563 541 563 0.99
12 25 9.4e-06 0.0013 20.5 0.7 2 23 570 591 569 591 0.97
13 25 0.00026 0.037 16.0 3.6 1 23 596 618 596 618 0.97
14 25 2.2e-05 0.0031 19.4 3.9 1 23 667 689 667 689 0.98
15 25 0.00085 0.12 14.4 2.9 1 23 695 717 695 717 0.99
16 25 2.5e-06 0.00035 22.4 1.2 1 23 723 745 723 745 0.98
17 25 0.025 3.5 9.8 4.2 1 23 751 773 751 773 0.96
18 25 0.0064 0.91 11.6 2.0 2 21 1112 1131 1111 1132 0.94
19 25 5.2e-07 7.3e-05 24.5 2.0 2 23 1195 1216 1195 1216 0.98
20 25 0.0001 0.015 17.3 1.0 1 23 1222 1244 1222 1244 0.98
21 25 0.00044 0.062 15.3 3.5 1 23 1250 1272 1250 1272 0.98
22 25 0.00098 0.14 14.2 2.4 1 23 1278 1300 1278 1300 0.98
23 25 0.00074 0.11 14.6 0.7 2 23 1448 1469 1447 1469 0.96
24 25 9.7e-07 0.00014 23.6 1.9 1 23 1475 1497 1475 1497 0.98
25 25 1.1e-05 0.0016 20.3 2.3 1 23 1503 1526 1503 1526 0.97

Sequence Information

Coding Sequence
ATGAATATAAGCAACGCAGTTCCTATCATACAAAATAATGATAATGAAACTGTAACATTAATAGCTTTACCACTTCAAATATTTCAACAAGCAACTCAACAATCTCTTATAGTAGAACAAAACTTATTATTTAAAACTCTACCTGATGGAACTCTAGTGATAGATACTAACCAGTTATTAAATGGAAATGATAACATTGCTCTAACATCTGCACCAGAAGCAAATTTTAACAACGAGAAAAGTTTTGATAATTCTGAACCACTAATTTATACTTTGCAGAAAACTGATGCACCCGTCCAAAGTATTCAGACAGAGGACATAAATATTCTTGACAATCCACCTCGAAAAGATGATAAAAATAAATCTAAAATTCGATATCTACACAGCAAATCTTCTTTAGATGTTCGAAAAGTGGGCAGACCTCGGAAAGATAGCACAAAAACAAAAATCGCAGATGATGGACCGTTCAAATGTAAATTATGCGATAAAGAGTTTGAAAAATTTATATTATATAAAAGACATGAAAAATCACACTTGAACGAGAAAAAATATAAGTGCCCTTCTTGTCCATCTTCATTTAATATTTTATCTAACCATCTATTGCATTTAGCAATTCACAATACAGAAGATCCAACATGTCCAGAATGTGGAAAAAAGTTTCAAAGAATTGCAAGTTTAAAAGCTCATATGATGTACCATGAAAAAGCGGAAAATTTTTACTGTGAAGATTGTGATATCTTATTTAATAATGAAATCGATATGAATGAACATGTTAAGGAACATGGACAAGACAAAAAAGTAGAAATAGATACATTGCAATGTAAATATTGTCAACTAACTTTTACAAATCATTCAGAATTTAAGAAACATATGAGTGAACATAACAAGATGAGAAGTATTTTACAGACATCACCACGAAAAAAACCTCGAAAAACtacaacagtcgaaagaaaacatcaatgtaatatttgttcgaaagcatttcaaaaacgaagtcaaattgagaggcacatgagggttcatagtggagagaaaccttacATTTGTAAAATTTGTAACCGCGGATTCAGCCAAAAAGGATCTCTTCAAATTCATATGACTCGTCATACTGGTGTTAGACCACATAAATGCGCTTTATGTCAAGCCAAATTTAGCCAAAAAGGAAATTTGCGCGCACACATTTTAAAAACGCACTCAATACCTCACGGCGGAGAAAACGTATTTTCATGTACAGAATGCTCTTGCGTTTTTAAACGTTTAGGAAGTCTAAACGGTCATATGACTCGCAACCACCCAAAAGAAAAAAACAGTGACATAAAATACGTCATCTCTCAGTTAGCCGCGATGCAGGGAAACATGGTCGTAGATAATGACATTCTTCAACAAGCTATTCTAAAATCAGATCTACCGGAAATACATCAGGACCAAACAACTGAAACTCCAACTGCAACATATGTAACTTTAGCGGATTTGGGATTGGATGGAAATATGCGACGATATGTTATTAAACAAAGGAGGGTCGGGGATATTCGATGGCATTTATGTTCGTTTTGTCCGAAAGAATTTAAAAAACCGTCGGATTTAGTCCGACATCTTAGAGTTCATACTCGAGAGAAACCGTATGTGTGTAAGTTGTGCTGTCGATCGTTTGCAGTAAAATCTACGCTAACAACTCATATTCGAACTCATACAAAATGTACCAAAGTACAATGTACATACTGTTACAAATTTTTCAGCTCTTGGACTAGTCTTAATGCTCATATTTTGAAACACACAGGTCAAAAACACAAATGTTCTGTATGCAATAAATCTTACCGAAGTTCTGGAAAATTAAATCAACATTTTCAGGTTCATTTAAATAATCATGCTTCGTATTACAAAGAACCGAACAGTAATATCGTTATGTTACAACCTATTCAGATTACAAATAAAGGTCTTCAACCTGTATTATCATTGAGAAAACGTCCTTTAACAGAAGCGGGTTGTAGAAACCGACCTTATACTTGCAAAGTTTGTGGAGCAGCTTTTAGACGACTAAGTCACTTAAAACAACATCATATTAAACATACTGGTGAACGCCCATTTCGCTGCCATTTATGTTACAGgagtttcgcatcaaacagcattttaaaaactcatattttaactcataacggtacaaaaccatacaaatgcgtaatttgccaaaagaatttttctactaacggaagtttaaaacgacatttagagtcgcatagtacagcaaaaccATTTTTATGTCCTTACTGTTTTAAAGATTTTAAAAACCTTATGCAATGCCGAAAACATATGATAACTCACAATCTAGAACTGAACTTACAAATGGAAACAAATGAACAATGTGCATTAACAAATACGGAAACAAATGAAATTTCATATCCGCCTGACCTGGCGGACACTTTAGTAGATGATCCGTTTTCGTTGGTTCAGCCGCTGCAACAAACTTTAGAAGATCCTAAAGACCAACAAATTGATGAAGTACATACGCCAACTTCAATGGTAACTCAAACTTTAAGAGCAGATGAAAGTGGAACTGTTGTTTTACCAGTTATTGCTAATCAAGAAAATTTGACTCAAGAAAATATGCGAGAAATAGAAGACACACTAAATACTCAAATGTTAAATATAATAGGCAATGATAATTTCGTAGATTCATCTACGTATATCAATAAGATTAATGAATCTGAACCGATTCCAACAACTGACGAATTAGTTAATACtttagctggaaatgccaatacagaaaaaacaatagaagataatccatttttatatcaccaagtcatcgttaatttaaattCTGAGACGGAACAAATGCCGATATTCGATAACAACGGAATCGATAACATTTTATCTCAAGTCAAACTTCAGAATGAGTCATTGTTTTTAACGGATCTAAATTCTCTCAACATTAGTAATATTAACGTCAACGAAACAAATAATGTACTGTTGCCATTTCAAATTGCGCCACAAGAAGATTTGCAACAAAATCAATTAATAATGTTACCACCAGAAATCGAACAAGAAATTCAGACTTCTGTTAATTTAGATAATATCGATCAAAATTTACAACTGAAATTAAATGCAATGAATGGATTTCTGAATCCAACTCAAAATATTACAATAGAAACACCGACAGAATTTTTAACCACCGAAGAAGATATTGTTAACGACGTGATACCAAACGTGAATGTAAATGTTGCTGGTTTACCAACGAAAACAATTGAAAATAGTATTATTAATGATGCCATAACAACTGACAATCATGTTACTGCTGTTATTCCTGCTGACATAATCACGAACCCGATGGACATAACTTGTAACTTATGTAAACTTCAATTCAAAACAAAAAATGATTTAAAAGTTCATCAATGTTTGAATTTTATAAATGTTGAAATGGACAGTCCTGAAATTGATAACAATATTGATACTGTGGAAACAATTCCTCAAGAAACATTTAATTCTGACGTTGGTAATGTTACCAAAGAAGTTTTTGACGAATTCATTTCACAGAAAGAGAAGGATCCTCTTGATTCTAAAAAACTTGCTCCAGTTTACAAAAATACTTGCACTTTTTGCCCAAAAACTTTTCGaaaaccttcagatcttcaaagacatcttagaacacatacaggcgaaaggccttttaaatgtgacgaatgtgctaaaagtttttctttaaagtcgactttagagagtcatagtaaaattcaccaaggtaaaaaagaatttacttgtcatgtttgtaactgtttattcgcgactaaaggaagtttaagcgttcatatgcgattgcatacaggtgtgaagccATTTAAATGTCCTTTATGTCAGTTAAAATTCCGAACTTCTGGTCACCGAAAAGCTCATTTAACTGTTCATTATAAAGAAGCTTTACGAACTGGAAAGATTCCGTCAGATGTTGTTACAAGAAAAGCGAAAATGAGTGAATTAATGGAAGGAGTGCAAAATATGATTGATTTAGATCTCGCTGAAAAGGAAAAAGACATCAGTGAATCTCAGTTAATACTTGAAAACATTCCTGTAGAGGCTTCGATGCAAATAACTCAACCAGTTGTAGATAGCATCGTTTTGCAAACAGATGAAAAACCATTAATGCATTTTGAAATCGAAACAAATACGCAAGGACAAATTATCAATATTAAACCTACAGCATCAAATATTATATTTGTTGATGAAACATCTAAAGAAGAAATTGTCTCGACACAAGTGGAATTCGACGAAAAGACGAAATTACAAATTGAAAATTTCCTTCGAGATAAAAAGGCAAAACAACAAGAAGTCAAAAATAAAATTAAAAAAGTTTGTAATGTATGTAATAAAGAATTTGGAACTAAATATTTGTTAGATAGACACAGTAAAATTCATACTGGTGAACGAATATTTTCTTGTAATTATTGTACAAAAACATTTAACCAGAAAAACGCGTTACAAGCTCATGTTAGAACGCATTTAGGGAGTAGACCTTATTGTTGTCCATATTGTTGGAATACTTTTAGTCAAAGTGGAAATTTGAAAACTCATATAAAAAGAATACACAGCGGAAATCTTCAAAATAAAGATACGGTACACTCAGGATTAATTGCAACTGATATTCTTCAAACCGATAATTTAGCTAGATAG
Protein Sequence
MNISNAVPIIQNNDNETVTLIALPLQIFQQATQQSLIVEQNLLFKTLPDGTLVIDTNQLLNGNDNIALTSAPEANFNNEKSFDNSEPLIYTLQKTDAPVQSIQTEDINILDNPPRKDDKNKSKIRYLHSKSSLDVRKVGRPRKDSTKTKIADDGPFKCKLCDKEFEKFILYKRHEKSHLNEKKYKCPSCPSSFNILSNHLLHLAIHNTEDPTCPECGKKFQRIASLKAHMMYHEKAENFYCEDCDILFNNEIDMNEHVKEHGQDKKVEIDTLQCKYCQLTFTNHSEFKKHMSEHNKMRSILQTSPRKKPRKTTTVERKHQCNICSKAFQKRSQIERHMRVHSGEKPYICKICNRGFSQKGSLQIHMTRHTGVRPHKCALCQAKFSQKGNLRAHILKTHSIPHGGENVFSCTECSCVFKRLGSLNGHMTRNHPKEKNSDIKYVISQLAAMQGNMVVDNDILQQAILKSDLPEIHQDQTTETPTATYVTLADLGLDGNMRRYVIKQRRVGDIRWHLCSFCPKEFKKPSDLVRHLRVHTREKPYVCKLCCRSFAVKSTLTTHIRTHTKCTKVQCTYCYKFFSSWTSLNAHILKHTGQKHKCSVCNKSYRSSGKLNQHFQVHLNNHASYYKEPNSNIVMLQPIQITNKGLQPVLSLRKRPLTEAGCRNRPYTCKVCGAAFRRLSHLKQHHIKHTGERPFRCHLCYRSFASNSILKTHILTHNGTKPYKCVICQKNFSTNGSLKRHLESHSTAKPFLCPYCFKDFKNLMQCRKHMITHNLELNLQMETNEQCALTNTETNEISYPPDLADTLVDDPFSLVQPLQQTLEDPKDQQIDEVHTPTSMVTQTLRADESGTVVLPVIANQENLTQENMREIEDTLNTQMLNIIGNDNFVDSSTYINKINESEPIPTTDELVNTLAGNANTEKTIEDNPFLYHQVIVNLNSETEQMPIFDNNGIDNILSQVKLQNESLFLTDLNSLNISNINVNETNNVLLPFQIAPQEDLQQNQLIMLPPEIEQEIQTSVNLDNIDQNLQLKLNAMNGFLNPTQNITIETPTEFLTTEEDIVNDVIPNVNVNVAGLPTKTIENSIINDAITTDNHVTAVIPADIITNPMDITCNLCKLQFKTKNDLKVHQCLNFINVEMDSPEIDNNIDTVETIPQETFNSDVGNVTKEVFDEFISQKEKDPLDSKKLAPVYKNTCTFCPKTFRKPSDLQRHLRTHTGERPFKCDECAKSFSLKSTLESHSKIHQGKKEFTCHVCNCLFATKGSLSVHMRLHTGVKPFKCPLCQLKFRTSGHRKAHLTVHYKEALRTGKIPSDVVTRKAKMSELMEGVQNMIDLDLAEKEKDISESQLILENIPVEASMQITQPVVDSIVLQTDEKPLMHFEIETNTQGQIINIKPTASNIIFVDETSKEEIVSTQVEFDEKTKLQIENFLRDKKAKQQEVKNKIKKVCNVCNKEFGTKYLLDRHSKIHTGERIFSCNYCTKTFNQKNALQAHVRTHLGSRPYCCPYCWNTFSQSGNLKTHIKRIHSGNLQNKDTVHSGLIATDILQTDNLAR

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_01226007;
90% Identity
-
80% Identity
-