Pnig033070.1
Basic Information
- Insect
- Pterostichus niger
- Gene Symbol
- Poxn
- Assembly
- GCA_947425015.1
- Location
- OX380337.1:5578157-5587494[+]
Transcription Factor Domain
- TF Family
- PAX
- Domain
- PAX domain
- PFAM
- PF00292
- TF Group
- Helix-turn-helix
- Description
- The paired domain, a ~126 amino acid DNA-binding domain, is found in eukaryotic transcription regulatory proteins involved in embryogenesis. Initially identified in Drosophila’s paired (prd) protein, it typically resides in the N-terminal region and may be followed by an octapeptide, a homeodomain, or a Pro-Ser-Thr-rich C terminus. Paired domain proteins act as transcription repressors or activators, with DNA-binding specificity mediated by three subdomains. Crystal structures reveal a bipartite DNA-binding paired domain: an N-terminal subdomain (PAI) and a C-terminal subdomain (RED), linked by a flexible linker. Both subdomains contain a helix-turn-helix motif that binds DNA's major groove, while the linker may bind the minor groove. Variations in domain usage across Pax proteins and isoforms determine sequence specificity.
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 2.3e-65 1.2e-61 207.6 0.5 2 125 6 130 5 130 0.99 2 2 1.4 7.7e+03 -1.7 0.1 11 32 171 192 169 199 0.82
Sequence Information
- Coding Sequence
- ATGAGTAAAAGGCGGCAAGCCGGTGTGAACCAACTAGGCGGCGTCTTCGTAAACGGACGTCCACTTCCAGACTGCGTCCGACGTCGTATCGTTGAGTTAGCCCTACTGGGCGTCAGACCTTGTGACATCTCTCGACAACTTCTCGTCAGTCATGGATGTGTGTCGAAGATTTTGACGAGGTTTTATGAGACTGGGTCTATTAGACCTGGGTCTATCGGAGGATCAAAAACCAAGCAAGTTGCCACCCCAACCGTCGTCAAAAAAATCCTCCGTTTCAAACAAGAAAACCCTGGAATGTTCGCCTGGGAAATCCGCGAACAGCTCCTCGCCCAGCGAGTCTGCGAGCCCCATAGCATCCCCTCCGTGAGCTCCGTAAACCGCATCCTCCGGAACAGCGGAGTATGGCCTACCCCGGAACAACCTACTCTCTCCTACCTACCATCACCGTCGCACGACTACACCGCGTGGAACACCAGGCCAACAAGGTTCTTCAGGTACCCAACACCGACAGTCAATGTGAATATTTTACCGGTACCGCAAGAGAGAAGAGAGGAAGCGGTAAATGTGACGACGGAACCGGTGGTCGAGCCTCAGAAGAAGAAGAATCCCTACTCGATAGAGGAGTTGTTGAAGAAACCAGAGAAGAAAGAAGAGAGTGTTGTTAGTGGGGTTTTTGTGCAGCCTTGTGGGTTGTTAGTTGATAACCCATGTAATTGTAATTTGTTAGGTACGCCCATGTAA
- Protein Sequence
- MSKRRQAGVNQLGGVFVNGRPLPDCVRRRIVELALLGVRPCDISRQLLVSHGCVSKILTRFYETGSIRPGSIGGSKTKQVATPTVVKKILRFKQENPGMFAWEIREQLLAQRVCEPHSIPSVSSVNRILRNSGVWPTPEQPTLSYLPSPSHDYTAWNTRPTRFFRYPTPTVNVNILPVPQERREEAVNVTTEPVVEPQKKKNPYSIEELLKKPEKKEESVVSGVFVQPCGLLVDNPCNCNLLGTPM
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01225621; iTF_00469582; iTF_01104278; iTF_00768196; iTF_00766461;
- 90% Identity
- iTF_01225621;
- 80% Identity
- -