Basic Information

Insect: Pteromalus puparum
Gene Symbol: PRDM10
Assembly: GCA_012977825.2
Location: Scaffold:2590214-2594249[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 9 0.0046 0.43 11.1 5.0 1 23 608 630 608 630 0.91

2 9 0.00011 0.01 16.2 1.6 2 23 639 660 638 660 0.97

3 9 4.6 4.4e+02 1.7 0.0 2 12 668 678 667 684 0.82

4 9 7.3e-05 0.0068 16.8 3.7 1 23 696 718 696 719 0.95

5 9 0.017 1.6 9.3 3.3 1 23 724 746 724 746 0.97

6 9 6.6e-06 0.00062 20.1 1.5 1 23 752 775 752 775 0.96

7 9 0.0014 0.13 12.8 1.0 1 23 809 832 809 832 0.97

8 9 3e-05 0.0028 18.0 2.4 1 23 854 877 854 877 0.97

9 9 0.0031 0.29 11.7 3.4 3 23 915 936 915 936 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	9	0.0046	0.43	11.1	5.0	1	23	608	630	608	630	0.91
2	9	0.00011	0.01	16.2	1.6	2	23	639	660	638	660	0.97
3	9	4.6	4.4e+02	1.7	0.0	2	12	668	678	667	684	0.82
4	9	7.3e-05	0.0068	16.8	3.7	1	23	696	718	696	719	0.95
5	9	0.017	1.6	9.3	3.3	1	23	724	746	724	746	0.97
6	9	6.6e-06	0.00062	20.1	1.5	1	23	752	775	752	775	0.96
7	9	0.0014	0.13	12.8	1.0	1	23	809	832	809	832	0.97
8	9	3e-05	0.0028	18.0	2.4	1	23	854	877	854	877	0.97
9	9	0.0031	0.29	11.7	3.4	3	23	915	936	915	936	0.98

Sequence Information

Coding Sequence: ATGGACCAAGGGGGCCCTCCTGAGGGGGCCCCTGTTGTCATCGCCGACCCCATGGACATGACCATCATCGACAAGGTCTGCAACGAGAGCAACTGGCCCGACGACAACATCGTCTCCTCCTCGACTTTCTGCGATAATCCGAGGAAGCTGAATAACAAACTGCTATTTTTGACGGTGGAGTATGTTGAAGATCAAGCCAGAGATTTTGGTCGTATGTATCCATACGAGCAAGTTTCCTTTTCGTCGAGGGCCAACTCTCCCTTATCAGACTTTGAACATCGCGTTAGCCCTCATGATCCAAACATGAGTTCAGCTGCGAGATACTCTCCAACTCCTGTTCCGCTGCCATCCTCACCATTTCACAATTCAGTGGTCGTTCTTCAGGAACCTTCTTCACCCCTCATATCAACGTCTGAATCAGCAGTAAGAATCACCAATGGATACTCATCTCAGCTTACTGATCAATCATCGAATCCCAGCTTATCTCAAAGTGATAATTCCGAAGATTTTACTGACAGTACGAGTGATGGACTAGTCTCGAGTGTTGGGAATGAATTGATGCTCATACAAGGTTCAAATTCAGAGCTAGAACCTTCTTCTACTCCACTTATGCTGTCAGGGATTTCAGCATCTGATCTCACACTTACAAGGGACTTTCTGGTCATGCAAGAAGATCATATCAATGTCATGAACCCTATGAAACTCAATTCAAGTTTGGAGCAAAATGTCAATCAAATTGCAGAGACCATCTTACCACACGATATTGATGAAGAAACAAACGCACAAATATCAACAATGAAAAATCTTAAAAAGTTTATAGAACAGCCAAATCAAATCTTGGATTCGAACAAGAAAGAAGTTCAGTGGCCAAAGGATCAAGCCATTGAAGATAATAGCCTATGGTATGAAGACTGTGATAGCACTTGCACAGATGTGGCAGATTGTACTTTACACAGTGTATGCACTATTGCCGATCAACCAGTTCCTTCTAGAGCTGTTGCAACACTACCAGGCCTCTACTTATCTATTGAGAAACTACCATCTTCTGACATCACTAATGCGCAATCAACAGAGTTTGGTATTTTCGCAAAAAGAAATATTCGTCGTCGTACTCAGTTTGGTCCAATAGAAGGTATTTTACGCCCTTACAATGGATCGCAAATCGAAGGTTTGCCGTTGTTATTAGAATCCAAAGAGGAAGGCGATTTTTTCCAGATCGACGTTTCCGACGAAAATTCTTCGAACTGGATGCGTTTCGTCAGACCTGCTAAAACTTACGAAGAACAAAACTTAGTTATAAGTCAACAAAACGATGGCATCGTGTTTCTCACAACTCGGAATATAATGCCCAATGAAGAATTGAAAGCTGGTCCAAGTCTCGAATATGGTAAACGTAGAAATTTACCAGTACTTGAAGTAAAATTTAAAAATAATTTAGATTCGACCGTAGATTTCTGCACTCAGTCTCACATAACGACTGGACCACTTGAGATCGCTGATGAAAAAATTACCAAAAGTTCAAACGTCGATAATTTACGAAATAATTGTACGAAACTACAGAAGAAACGCAAACCTACTCGTAGTTCATTCCAAAAATACGTAGAAGCTAACGAAATCAAAGATAACGATTCAAGTGATATAAGTATTCTTCGAAGTGTTAGCAAAGACTTGAAATATACAGGATCTCCAAAACTGAATGATGAAGACAAAGAAAAAGAAAACTCTCCAGATTCTAAGTTAGAATTAATGAAACAAGAAGTAACGCAATCTGATCAAACGGATATTTCAGAGAAAAATGCGAACGTTGTCTCATCTAGTATTTACAAATGCGACATATGCTCAAAACGATTTTCAACCAAATTAAAGTTTCAACAGCACTGCCTAGTACATGGTGTCAAAGATAATGAATCGCTTACATGTAATATTTGTTTAAAAACGTTTTTAAACAACTCTTCTCTATCTCGTCATTTGAAAACTCACCAAAAAGAAAGACAGACTCTCGAGTGTCCTGTGTGCAGAGAAGCATTCGGACGCGTCTTGACTTTGAAAGATTTTGTAGAAACGCATCTCAATCAATATGAAACATTCACCTGCCCTCACTGCCCAAAATCGTTTACGAGTTATGCACTAACTCGTAAACACGCTAGAGCACATCATTTCGATCGGAAACATGAGTGCCAGTTTTGCTTGAAATGTTTTCCAGCTGCGGATAAATTGAGAATGCATTTACTAAAACACTCCGATCGCAGAGAATTTCAATGTGCAAATTGTGGCAAACAATTCAAACGAAAGGACAAACTCAAAGATCACGTTACTCGTGTACATTATACGCCAAAGACTAACAAGGACCAACTATCGTCAAATAATCGTGCCAAAAAAGCAATCCCAAAGCAGACAAATCCAGTAGATTGTGACCGTTTTATTTACAAATGTCGTCGTTGCCAAGTGGGTTTTAAGCGTAGGGGTATGCTCGTTAATCACTTAGCCAAGCGTCATCCAGATGTCCCACCCGAGTCTGTACCAGAGCTTAGTTTGCCAATTCTGCGACAAACGAGAGATTATTATTGTCAATATTGCGACAAGGTTTACAAAAGTAGCAGCAAACGAAAAGCGCACATAATGAAAAATCATCCAGGTGCAGCCTTACCACCAAGCAATAGAAACAAGGAGTTCGACATTCCTGGTTTACCGAATCCAACGTTTAGCCAGGCTGCTGGCAGTATCAAAACTGCTCCACAGGGATGCCAGTGGTGCCACAAGCAGTATGCCAGCAAAGCGAAACTCCTGCAGCACCAGCGTAAAAAACACTCCAGTCTGATGGAGCCGGCGGATCAGATACCCCGCCCTCGAAGCCGTCCACCTCAAAATCAAAACCAACCGCCACCGCCCACCTCGAGCAGCTCGGCCGCAAACAACAAGCCCGACAACAGCAACGATGAGCCGAGCAGCGAAGCGGAATTTTTGAAGCCGCGCATAATTCGTACAAATGGTGCCAGCGGCGAGTCTTTGCCCATCAGCAACAACAACAATAACGGATTCGAATTGCTGACAAGCGGGCCGCAGTTTGCTCGCGTGCGCGACATGCGCTGA
Protein Sequence: MDQGGPPEGAPVVIADPMDMTIIDKVCNESNWPDDNIVSSSTFCDNPRKLNNKLLFLTVEYVEDQARDFGRMYPYEQVSFSSRANSPLSDFEHRVSPHDPNMSSAARYSPTPVPLPSSPFHNSVVVLQEPSSPLISTSESAVRITNGYSSQLTDQSSNPSLSQSDNSEDFTDSTSDGLVSSVGNELMLIQGSNSELEPSSTPLMLSGISASDLTLTRDFLVMQEDHINVMNPMKLNSSLEQNVNQIAETILPHDIDEETNAQISTMKNLKKFIEQPNQILDSNKKEVQWPKDQAIEDNSLWYEDCDSTCTDVADCTLHSVCTIADQPVPSRAVATLPGLYLSIEKLPSSDITNAQSTEFGIFAKRNIRRRTQFGPIEGILRPYNGSQIEGLPLLLESKEEGDFFQIDVSDENSSNWMRFVRPAKTYEEQNLVISQQNDGIVFLTTRNIMPNEELKAGPSLEYGKRRNLPVLEVKFKNNLDSTVDFCTQSHITTGPLEIADEKITKSSNVDNLRNNCTKLQKKRKPTRSSFQKYVEANEIKDNDSSDISILRSVSKDLKYTGSPKLNDEDKEKENSPDSKLELMKQEVTQSDQTDISEKNANVVSSSIYKCDICSKRFSTKLKFQQHCLVHGVKDNESLTCNICLKTFLNNSSLSRHLKTHQKERQTLECPVCREAFGRVLTLKDFVETHLNQYETFTCPHCPKSFTSYALTRKHARAHHFDRKHECQFCLKCFPAADKLRMHLLKHSDRREFQCANCGKQFKRKDKLKDHVTRVHYTPKTNKDQLSSNNRAKKAIPKQTNPVDCDRFIYKCRRCQVGFKRRGMLVNHLAKRHPDVPPESVPELSLPILRQTRDYYCQYCDKVYKSSSKRKAHIMKNHPGAALPPSNRNKEFDIPGLPNPTFSQAAGSIKTAPQGCQWCHKQYASKAKLLQHQRKKHSSLMEPADQIPRPRSRPPQNQNQPPPPTSSSSAANNKPDNSNDEPSSEAEFLKPRIIRTNGASGESLPISNNNNNGFELLTSGPQFARVRDMR

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00309747;
90% Identity: iTF_01037314;
80% Identity: -