Plou006662.1
Basic Information
- Insect
- Psyttalia lounsburyi
- Gene Symbol
- Trl
- Assembly
- GCA_030522865.1
- Location
- JAPYZN010001749.1:20508-21386[+]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 3 1.8e-18 3.3e-14 53.7 0.1 19 50 14 45 9 48 0.91 2 3 1.4 2.6e+04 -3.6 0.1 21 26 121 126 118 135 0.67 3 3 1.2 2.3e+04 -3.4 0.0 31 41 167 177 163 180 0.59
Sequence Information
- Coding Sequence
- ATGTACGTTATAggattttATACCCAGTACAAGGTGAAAAACGTCTCGGATCAGCCCACGACGTGTCCTCTGTGTGGAGCGATATTGAGACAGTCCAGGAATCTCAGGAGACACTTGGAGCTGCTCCACTTTGGGCCCGGTAACAGTGGAAATTCGGGAATAAGAGTGCGAAGGCGTAAAACTGACTTTCGATCTCCAACTATGGTTCCAAGACCGAATCTACACAGTCTGAGGATGGAGCAGACGAGGTCCATTGAGAATCCCGATTTTTCTTCTGCCTCCATAGCCTCCAGTCTGGCAGGCAATTTACTATCATCCGGCGGTAATCTACTGAACTCACCCGATCAATGCCTCCAATCATCTGAGACGCCCGCCAGCGCATGCAGTACAACAATCGCTAGCTCTTTGAACAATGGAATTTATCCTGTAGACACTAGTGCAAGTATGCTGAGCTGTCTACTACCGAATTTACCTTCATTACCGTCTTTGCCCACCTCCCACGATGTCTTCAGGCACAGTGAAATCCTCCGGGCGGGGATGGCGTATCATGACTCGTCGAGACAGCACGCACGGCAATTTCAGCGTACAGATGTCACGTAG
- Protein Sequence
- MYVIGFYTQYKVKNVSDQPTTCPLCGAILRQSRNLRRHLELLHFGPGNSGNSGIRVRRRKTDFRSPTMVPRPNLHSLRMEQTRSIENPDFSSASIASSLAGNLLSSGGNLLNSPDQCLQSSETPASACSTTIASSLNNGIYPVDTSASMLSCLLPNLPSLPSLPTSHDVFRHSEILRAGMAYHDSSRQHARQFQRTDVT
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01273464;
- 90% Identity
- iTF_01273464;
- 80% Identity
- -