Basic Information

Insect: Psyttalia lounsburyi
Gene Symbol: -
Assembly: GCA_030522865.1
Location: JAPYZN010000775.1:22098-25740[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 15 0.21 35 6.1 0.2 3 23 113 134 111 134 0.95

2 15 0.0017 0.29 12.7 1.2 2 23 139 161 138 161 0.95

3 15 1.1 1.8e+02 3.9 0.0 2 23 212 233 211 233 0.92

4 15 0.0029 0.48 12.0 1.3 2 23 239 261 238 261 0.94

5 15 0.11 18 7.0 0.7 3 20 273 290 271 291 0.93

6 15 0.00033 0.055 14.9 4.6 1 23 297 320 297 320 0.98

7 15 0.0036 0.6 11.7 3.4 1 23 333 355 333 355 0.98

8 15 0.091 15 7.2 0.0 3 23 365 386 363 386 0.91

9 15 1.8e-06 0.00029 22.1 1.2 1 23 392 414 392 414 0.98

10 15 0.042 7 8.3 0.3 2 23 418 440 417 440 0.92

11 15 3.2e-05 0.0053 18.1 2.6 1 23 450 472 450 472 0.97

12 15 0.0013 0.22 13.0 1.1 1 23 478 500 478 500 0.97

13 15 0.00015 0.025 16.0 2.2 1 20 505 524 505 525 0.95

14 15 0.00031 0.051 15.0 5.6 1 23 535 557 535 557 0.99

15 15 0.61 1e+02 4.6 2.4 1 23 563 586 563 586 0.93

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	15	0.21	35	6.1	0.2	3	23	113	134	111	134	0.95
2	15	0.0017	0.29	12.7	1.2	2	23	139	161	138	161	0.95
3	15	1.1	1.8e+02	3.9	0.0	2	23	212	233	211	233	0.92
4	15	0.0029	0.48	12.0	1.3	2	23	239	261	238	261	0.94
5	15	0.11	18	7.0	0.7	3	20	273	290	271	291	0.93
6	15	0.00033	0.055	14.9	4.6	1	23	297	320	297	320	0.98
7	15	0.0036	0.6	11.7	3.4	1	23	333	355	333	355	0.98
8	15	0.091	15	7.2	0.0	3	23	365	386	363	386	0.91
9	15	1.8e-06	0.00029	22.1	1.2	1	23	392	414	392	414	0.98
10	15	0.042	7	8.3	0.3	2	23	418	440	417	440	0.92
11	15	3.2e-05	0.0053	18.1	2.6	1	23	450	472	450	472	0.97
12	15	0.0013	0.22	13.0	1.1	1	23	478	500	478	500	0.97
13	15	0.00015	0.025	16.0	2.2	1	20	505	524	505	525	0.95
14	15	0.00031	0.051	15.0	5.6	1	23	535	557	535	557	0.99
15	15	0.61	1e+02	4.6	2.4	1	23	563	586	563	586	0.93

Sequence Information

Coding Sequence: ATGGATTCAACTATTGTTGAAAATACGTGCAGATTATGTGCAGATCGTGGGAGGAATTATCATGCAATTTTCACGTCCAATTCGCATTCCATCGCTGATAAAATCAATAGTTGTTTGCCAATAATGATAAGTGCAGACGATGGTCTGCCATCGCACATTTGTTCTCCCTGTTTAACCGACTTGAACACCTCCCATAAGCTACgagaaaaatcattggagACAGATGGGATTCTGAGACAGCAGATGACGGTAGTACTGATCGATGAAATCAAACAGGAGAATGATCTTGAAAGTGACAATGAGGACAAAGACATAGATCCCATGGAAACATTATTCTGTGGCATATGTGAAGCCAATTTTGATGACATGAACACCTTTGATAGTCACATGGAGAAGTACCACGCCTCCCAGTGGATCTGCAATTTATGTCAACGGGATTTTGAGACGTCCGAGGAGTTACTTCAACACAAGCACACTAATCACTACGAAAGCACCGGTAATCTTCCGGATGACGAACGTGTCGACTCCGATGTCTCCGAGGATCTGTCTGATAAcgaagaattaattgaaataaagcACGAAGCACTCCAGAACTGCCGAAAATCTCAGGAGAAGGAAAAAGAAGAGCCCGTTCCCTGCGACATATGTGGCGTGATGATTGAGACTGAAAGTTTTATGGTTCTCCACGTTAAATTCCACCAGCCTCGCTCCATGTACTGCTCCAGCTGTGATCACTCGTACTCGTCTCCCTACGatctttttcttcataaacAAAATATACATAAGGCATTCGTGGATCAGAAGATGAAATGGTTCTGCGACAATTGTGAAAGGTTCAGCTCGAATcctagatttttaaagaagcatgaaaattgtggaaaaattaaGTTCAAGTGTAAATATTGTCTAGTGGAGTTCACGAAACAAAAGGAATTTACTAGGCATCAAAAAaaaaatcaCTACGACAAAATGTTCGTCGATCCTGACGTGGTGAAATTCAAATGTCCGACCTGTGGAAAACTCTTCATTGAGAGGAGCTCCTACACCTGTCATCTGAGGCAACATCGCTTGAGGATGGAGAGGAAATACGGCTGTGCCGAATGTGACGCAAGTTTTTTGAGCTCAGCGCAGTTGAAGGGCCACATGGACGACATTCACGTCAGGCGAAGGGATTATAAATGCAGCAGTTGTGGAAAAGGGTTCACTAGCAATCGAAGTCTGAAAGCCCATGAGATGAGACACATAAGCCAAACGTGTCGGGAGTGTGGAGAGCAGTTCGAAAATACCCGAATACTCCAGAAGCACTTGTTGGACATACACAGCATTTCTACTCCCGCAACGGGGAAGCATAGTTGCAAAGAATGTGGCaaaaaattcccgaaattGAGACTGTTGAAGGACCACCGGAACATTCATTCGGGAAAACGACCGCATGTTTGTGACATCTGTAAAGAAACCTTCCGGACATATGCCGCGAGATGGTCACACGTCCAGAAGCACAAAAATGGAGGATTTTTCTGTGATTATTGTCAGCGAAAATTTTCaACGAAAGGTCACGTTAGACGACATTTGGTCTGCCACTTACCCCCCGAAGACTGGAAGTACAAGTGTGAAACCTGCAGTCAGAAATTCCAAAGAAAATCTCATTTAGATACTCACGTCAAGAAACATACCGATACTCGGCCCTATAAATGTGATCTGTGTGATGCAAGATTCCTGAAAGATAAGTTTCTCATGCAACATAAGAAACGCCGGCACAATGAGCCTCTGCCGAAGAGAATccggatcaaaaattttccgctgaatttattgtaa
Protein Sequence: MDSTIVENTCRLCADRGRNYHAIFTSNSHSIADKINSCLPIMISADDGLPSHICSPCLTDLNTSHKLREKSLETDGILRQQMTVVLIDEIKQENDLESDNEDKDIDPMETLFCGICEANFDDMNTFDSHMEKYHASQWICNLCQRDFETSEELLQHKHTNHYESTGNLPDDERVDSDVSEDLSDNEELIEIKHEALQNCRKSQEKEKEEPVPCDICGVMIETESFMVLHVKFHQPRSMYCSSCDHSYSSPYDLFLHKQNIHKAFVDQKMKWFCDNCERFSSNPRFLKKHENCGKIKFKCKYCLVEFTKQKEFTRHQKKNHYDKMFVDPDVVKFKCPTCGKLFIERSSYTCHLRQHRLRMERKYGCAECDASFLSSAQLKGHMDDIHVRRRDYKCSSCGKGFTSNRSLKAHEMRHISQTCRECGEQFENTRILQKHLLDIHSISTPATGKHSCKECGKKFPKLRLLKDHRNIHSGKRPHVCDICKETFRTYAARWSHVQKHKNGGFFCDYCQRKFSTKGHVRRHLVCHLPPEDWKYKCETCSQKFQRKSHLDTHVKKHTDTRPYKCDLCDARFLKDKFLMQHKKRRHNEPLPKRIRIKNFPLNLL

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00438968;
90% Identity: iTF_01273297;
80% Identity: -